Non-Coding RNA Search

Ss1.1-Mixc-0033k06.3

Sequence:


               
               GAGCGAGACTCTGCCGGCTTACCCAGTGAGCTGCCTGAGTGAAGCTGCGATTCCCAGTGG
GGGGCCCCTTGGTGGCACTGTCGCTCACACACACACACACCCCTCTTGAACTCTCCTTGT
GGCCATCAGATGTCACTGGAGCAGGTATTGCAGCCCCAGATAGATCAGCTCAAAGCCTTG
CTCTTTGGTATCCCAGGCAGCGCGTTGCTTACCGTTTCGGAAGCAGGACAGGCCTGCTTG
TTGCTGTCTGGCTCAAGTACCAAAAGTGGCGTTAAGCATTCCTGAGAGCATTCTGTGGCT
TAGCACGCACCATTTAGTACAAAGTAAATGGACATAAAGAGCTTTGTGAGAAAGTTTGCA
TCCAAAAATTGAACATTTCATTAAAAATCACTGTCCCCTTAATCCAGGCTACTTAACACA
GGACAATCTAAGAAGCGGAATATTCCCCAAGTATCTGCAGGCGTTCAGTGTTGCCTCCGT
GTGTCAACCTCATGTAACTCCTTTCCTGTGTGGGAATCAAAAGGTTAAAATAATACCTAA
AATCGGAGGATTTCTTTCCCTTTTTCCCTTTTTGCAGAGTCTTCCCTCCAGCCTAAGTGT
AAGCGGGACCACTGGCTAGTCCTGTGTGCCCCTTCCTAAGCCCGTAGGTGCTGCCAGCCA
GCTAGCTGGTGCTCCACAGCTTGGACAGGGCTGATGCCTGTGCCAGGCTTTTATGTCGGG
GTCATTTGGTTTGGGCCTCGTTTACCCAACACCGCAGGAACGCCTCAAGGCTGGACGTGG
GTTGGAATTACAGGCTCATCTTCCTGAGAGTTTGTGGCTGTTGGAAGGAGACATTGTTTT
TCATGTTAAGACTCAAACACTTAAGTTGCTAAGTAGGCCTGTTATTGCTTTTTAAATTAG
TTTTTAGATGCCCCCCCCCATTTTCAAGTAAAAGATGGGGTGGGGATGAGTGTGAGAGAG
TGTACACTGGCTCAGAGATAAATCGCGGGCCCTGAGCAGCACCAGCTCTGGACTAGCACG
AGGCATTAGAAGATGCACCGGGCAGAAGAATCTCCACGAGCAGTGCTTTTTATGTCACTA
TCAGCAGATTCCTTAATGGTTTTATAACTGTAAATGCTGTCTGTGCACTACTGAGTGGGA
GTAATGAGCATTAGTTAAAAGAGGCAAATGAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCGAGACTCTGCCGGCTTACCCAGTGAGCTGCCTGAGTGAAGCTGCGATTCCCAGTGG
GGGGCCCCTTGGTGGCACTGTCGCTCACACACACACACACCCCTCTTGAACTCTCCTTGT
GGCCATCAGATGTCACTGGAGCAGGTATTGCAGCCCCAGATAGATCAGCTCAAAGCCTTG
CTCTTTGGTATCCCAGGCAGCGCGTTGCTTACCGTTTCGGAAGCAGGACAGGCCTGCTTG
TTGCTGTCTGGCTCAAGTACCAAAAGTGGCGTTAAGCATTCCTGAGAGCATTCTGTGGCT
TAGCACGCACCATTTAGTACAAAGTAAATGGACATAAAGAGCTTTGTGAGAAAGTTTGCA
TCCAAAAATTGAACATTTCATTAAAAATCACTGTCCCCTTAATCCAGGCTACTTAACACA
GGACAATCTAAGAAGCGGAATATTCCCCAAGTATCTGCAGGCGTTCAGTGTTGCCTCCGT
GTGTCAACCTCATGTAACTCCTTTCCTGTGTGGGAATCAAAAGGTTAAAATAATACCTAA
AATCGGAGGATTTCTTTCCCTTTTTCCCTTTTTGCAGAGTCTTCCCTCCAGCCTAAGTGT
AAGCGGGACCACTGGCTAGTCCTGTGTGCCCCTTCCTAAGCCCGTAGGTGCTGCCAGCCA
GCTAGCTGGTGCTCCACAGCTTGGACAGGGCTGATGCCTGTGCCAGGCTTTTATGTCGGG
GTCATTTGGTTTGGGCCTCGTTTACCCAACACCGCAGGAACGCCTCAAGGCTGGACGTGG
GTTGGAATTACAGGCTCATCTTCCTGAGAGTTTGTGGCTGTTGGAAGGAGACATTGTTTT
TCATGTTAAGACTCAAACACTTAAGTTGCTAAGTAGGCCTGTTATTGCTTTTTAAATTAG
TTTTTAGATGCCCCCCCCCATTTTCAAGTAAAAGATGGGGTGGGGATGAGTGTGAGAGAG
TGTACACTGGCTCAGAGATAAATCGCGGGCCCTGAGCAGCACCAGCTCTGGACTAGCACG
AGGCATTAGAAGATGCACCGGGCAGAAGAATCTCCACGAGCAGTGCTTTTTATGTCACTA
TCAGCAGATTCCTTAATGGTTTTATAACTGTAAATGCTGTCTGTGCACTACTGAGTGGGA
GTAATGAGCATTAGTTAAAAGAGGCAAATGAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               139-291, - strand, RNAz p=0.919437
               

               
               580-690, - strand, RNAz p=0.596451
               

               
               883-1002, + strand, RNAz p=0.968897

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               139-291, - strand, RNAz p=0.919437
               

               
               580-690, - strand, RNAz p=0.596451
               

               
               883-1002, + strand, RNAz p=0.968897

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               123-1176, gnl|bosTau2|chr9 (56974778-56973708)
               

               
               123-1176, gnl|Hg17|chr6 (157596346-157597382)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               123-1176, gnl|bosTau2|chr9 (56974778-56973708)
               

               
               123-1176, gnl|Hg17|chr6 (157596346-157597382)

	139-291, - strand, RNAz p=0.919437
	580-690, - strand, RNAz p=0.596451
	883-1002, + strand, RNAz p=0.968897

	123-1176, gnl\|bosTau2\|chr9 (56974778-56973708)
	123-1176, gnl\|Hg17\|chr6 (157596346-157597382)