Non-Coding RNA Search

Ss1.1-Mixc-0034,d17.3

Sequence:


               
               CCAGAGGACGAGACAAGGGGGAGGCGTCTAAAGAGAACTTCAAAAGGAGTGAAAAGATTA
AAAAGACAGTGAGAGGCAGGAAGCTGAGAGACCAGGGCAGCTTCTCCAATGTTAAGACAG
TCTGTTTGTTGAAGAAAAGTGCTGCCTTGAACATGGTGATTCCTGAGGATTCAGGAGACT
CTGAGTTGGAAGAGGAAGATGATGAAATGGATGAGGTCGAATGCCTCCTTGAAGAAGTGA
GTGCAGAGCCCTCTGACAGCTTCCAAAGGAAGGTCTTATCAGAAGGCTGGGAGGATGCTC
AGGGTGCCCCCTGAGAGCGCTCTCCCTCCCCAGCTTATTGCCTGGCCCACGAGAAATAAG
TACAAGCTGCTGCAAGTTCATGGTGGATATGAGCGCATCCCTGAGGTGTATCAGTCGGAA
CCACGGGATGGCTGTGAGAGCAGCGGTGACAGGCTCCGAAGCAAACACACCATGGCCAGG
CTGAAAGGCCTGGAGTCCAGGAGAGCCTCCCACAAATGATTGGAATGAATATCACCGAAG
CATCTTCTCCCAGGCAGCTACGGTCCTGTGCAAGACCACTGCCCTGAGCAAGAAGCCTGG
AGTCAGAGCACCGCTCTGCCTCTTACCTCGGACACTTACTGGCATATGCAAGGCGGCTTC
CTCATCTACAGAATAGGGGTCATGCCTTTACTTTAACAGTGCTGTGGTGAGAACAAGTTA
ATTAAAAGAAGTGAACTCATTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGAGGACGAGACAAGGGGGAGGCGTCTAAAGAGAACTTCAAAAGGAGTGAAAAGATTA
AAAAGACAGTGAGAGGCAGGAAGCTGAGAGACCAGGGCAGCTTCTCCAATGTTAAGACAG
TCTGTTTGTTGAAGAAAAGTGCTGCCTTGAACATGGTGATTCCTGAGGATTCAGGAGACT
CTGAGTTGGAAGAGGAAGATGATGAAATGGATGAGGTCGAATGCCTCCTTGAAGAAGTGA
GTGCAGAGCCCTCTGACAGCTTCCAAAGGAAGGTCTTATCAGAAGGCTGGGAGGATGCTC
AGGGTGCCCCCTGAGAGCGCTCTCCCTCCCCAGCTTATTGCCTGGCCCACGAGAAATAAG
TACAAGCTGCTGCAAGTTCATGGTGGATATGAGCGCATCCCTGAGGTGTATCAGTCGGAA
CCACGGGATGGCTGTGAGAGCAGCGGTGACAGGCTCCGAAGCAAACACACCATGGCCAGG
CTGAAAGGCCTGGAGTCCAGGAGAGCCTCCCACAAATGATTGGAATGAATATCACCGAAG
CATCTTCTCCCAGGCAGCTACGGTCCTGTGCAAGACCACTGCCCTGAGCAAGAAGCCTGG
AGTCAGAGCACCGCTCTGCCTCTTACCTCGGACACTTACTGGCATATGCAAGGCGGCTTC
CTCATCTACAGAATAGGGGTCATGCCTTTACTTTAACAGTGCTGTGGTGAGAACAAGTTA
ATTAAAAGAAGTGAACTCATTTGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               198-339, - strand, RNAz p=0.959527
               

               
               380-499, + strand, RNAz p=0.787932

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               198-339, - strand, RNAz p=0.959527
               

               
               380-499, + strand, RNAz p=0.787932

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               18-526, gnl|bosTau2|chr4 (34426077-34426580)
               

               
               18-526, gnl|Hg17|chrX (141125826-141126361)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-526, gnl|bosTau2|chr4 (34426077-34426580)
               

               
               18-526, gnl|Hg17|chrX (141125826-141126361)

	198-339, - strand, RNAz p=0.959527
	380-499, + strand, RNAz p=0.787932

	18-526, gnl\|bosTau2\|chr4 (34426077-34426580)
	18-526, gnl\|Hg17\|chrX (141125826-141126361)