Non-Coding RNA Search

Ss1.1-Mixc-0034c24.5

Sequence:


               
               GCCTCCCACTCGGGCCGTCCGGCGGTCGGTGCCTCCGCCCGCGTGTCGGTCCCGGGTGCC
GGGGGATGTGTGTCAGTTTACGCCTCTGAGATCGCACAGCTGCCTGGGGGCCGTGTGATG
CCCAAGGCAAGTCTTGGCTTTTATTTTTATTATTTTTGTCTTGTTTTACCCTTGGCTTAC
GGGAAATATTCGTGATGTTGTAGGATAAAGGAAATGATACTTTGAGGAACTGGAGAGGAC
ATAGATGCGTTTTGTTTTTAGGAGAGGAAACGCGTCCTCTCTTCTTGGCTTGCTCCCTCT
TTGCTGACTTCAGGAGCGACCCTCCTTCCTCCTGGTGAGGTGGGGACCCAGCAAGAAGAA
AGGTGAAGACCGGCCGCCAAGAGCCAGGAGGGAAACACTGACCATTAGAAACCTTTGCAG
AGGACACTGCAAGGAAGAACACAAGAGAGAGAAAAACACAAAAGACTTCTAATTGTGCAA
GAAAGCTACCAAAACAGCTCTGGAGAAAGCCTCCTTCTCCAACATGGATATGTTTCCTCT
CACCTGGATTTTCTTAGCTCTCTACTTTTCAGGACTCCAAGTGACAGGCCAACCAGATCC
ACCCTGTGGAGGTCGATTGAATTCCAAAGATGCTGGCTACATCACGTCCCCAGGTTACCC
CCAGGATTATCCATCCCATCAGAACTGCGAGTGGATTGTTTATGCCCCCGAACCCAACCA
GAAGATCGTTCTCAAACTTCACCCTCACTTTGAAATTGAGAAGCACGACTGCANGTATGA
CTTCATCGAGATTCGGGATGGGGACAGCGAGTCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTCCCACTCGGGCCGTCCGGCGGTCGGTGCCTCCGCCCGCGTGTCGGTCCCGGGTGCC
GGGGGATGTGTGTCAGTTTACGCCTCTGAGATCGCACAGCTGCCTGGGGGCCGTGTGATG
CCCAAGGCAAGTCTTGGCTTTTATTTTTATTATTTTTGTCTTGTTTTACCCTTGGCTTAC
GGGAAATATTCGTGATGTTGTAGGATAAAGGAAATGATACTTTGAGGAACTGGAGAGGAC
ATAGATGCGTTTTGTTTTTAGGAGAGGAAACGCGTCCTCTCTTCTTGGCTTGCTCCCTCT
TTGCTGACTTCAGGAGCGACCCTCCTTCCTCCTGGTGAGGTGGGGACCCAGCAAGAAGAA
AGGTGAAGACCGGCCGCCAAGAGCCAGGAGGGAAACACTGACCATTAGAAACCTTTGCAG
AGGACACTGCAAGGAAGAACACAAGAGAGAGAAAAACACAAAAGACTTCTAATTGTGCAA
GAAAGCTACCAAAACAGCTCTGGAGAAAGCCTCCTTCTCCAACATGGATATGTTTCCTCT
CACCTGGATTTTCTTAGCTCTCTACTTTTCAGGACTCCAAGTGACAGGCCAACCAGATCC
ACCCTGTGGAGGTCGATTGAATTCCAAAGATGCTGGCTACATCACGTCCCCAGGTTACCC
CCAGGATTATCCATCCCATCAGAACTGCGAGTGGATTGTTTATGCCCCCGAACCCAACCA
GAAGATCGTTCTCAAACTTCACCCTCACTTTGAAATTGAGAAGCACGACTGCANGTATGA
CTTCATCGAGATTCGGGATGGGGACAGCGAGTCTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8BPZ0_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8BPZ0_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-191, + strand, RNAz p=0.52219

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-191, + strand, RNAz p=0.52219

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_201264, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_201264, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-596, gnl|bosTau2|chr2 (54618045-54617452)
               

               
               1-596, gnl|Hg17|chr2 (206373010-206373593)
               

               
               1-596, gnl|Mm7|chr1 (62944350-62944939)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-596, gnl|bosTau2|chr2 (54618045-54617452)
               

               
               1-596, gnl|Hg17|chr2 (206373010-206373593)
               

               
               1-596, gnl|Mm7|chr1 (62944350-62944939)

	1-596, gnl\|bosTau2\|chr2 (54618045-54617452)
	1-596, gnl\|Hg17\|chr2 (206373010-206373593)
	1-596, gnl\|Mm7\|chr1 (62944350-62944939)