Ss1.1-Mixc-0034m03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCCGCTGCGCCGCGCGGCCTTCTTCCTCCCTTCGAGAGCGCGTGTCGAGGAGGGCCTCA GCACTAGCTCACACCATGTGGACGGCGGATGAGATTGCACGGCTGTGTTACGAGCACTAT GGGAGCAGGCTGCCCAAGCAAGGGAAGCCTGAGCCCAACCGTGAGTGGACGCTGCTCGCA GCCGTGGTGAAGATACAACCTGCAGCTGACCAGGTCTGCGACTGCCCTGACAGACCCGTG CAAGTGACAAAAGAAGTTGTCTCAATGGGAACAGGAACCAAATGCATAGGCCAGTCCAAA ATGAGGAAGAGCGGAGACATCCTCAATGATAGCCATGCCGAGGTCATAGCCAGAAGAAGT TTCCAGAGGTACCTCCTCCATCAGCTGCACTTGGCGGTCACTCTGAAGGAGGGTAGCATC TTTGTCCCAGGAACTCAGAGAGGACTGTGGAAACTCAGACCAGACACCTTGTTTGTGTTT TTCTCCAGCCATACACCCTGTGGCGATGCCTCCATCATTCCAATGCTTGAGTCTGAAGAT CAGCCTTGCTGTCCTGTCAGCAGAGATTGGGCCAATAACCCATCAGCAGAAGCCAATAAT AACCTAAAAGCCGCCCACAGTGGTGCCAAAGTGGTGGACATTTATAGAACTGGAGCTAAG TGTGTGCCTGGAGAAGCTGGTGACTTGGGAGGGCCTGGTGCTGCGTATCACCAAGTAGGA CTGCTCCGCGTGAAGCCAGGCCGAGGGGACAGGACTTGCTCCATGTCCTGCAGTGACAAG TTGGCACGGTGGAACGTTCTTGGATGCCAAGGGGCACTGCTGATGCACTTCCTGGAAGAG CCTGTCTACCTGTCAGCCGTGGTCATTGGAAAGTGCCCGTACAGCCAGGAGGCCATGCAG AGAGCACTGATTAGAAGGTGTCGGACCATCTCAGCTTTACCCAAAGGCTTTGGAGTTCAA GAAGTGAAAATACAGCAGTCAGATATACTATTTGAACAAAGCCGCTGTGCGGTGCAGGCA AAAAAGGCTGACAGCTCAGGCCGACTTGTTCCTTGTGGGGCAGCCATCAGCTGGAGTGCA GTTCCTGAGCAGCCTTTGGATGTTACTGCCAATGGTTTTCCACAGGGAACAACAAAGAAA GCAATCGGAAGCCCTCAGGCCAGATCCCGAATCAGCAAAGTAGAGCTCTTTAGATCATTC CAGAAGCTGCTAAGCAGTGTTTCAGAGGACAAGTGGCCAGACTCACTCAGGGTGCAGAAG CTAACGACGTACCAAGAATACAAAGAGGCTGCAGCCACTTACCAGGAGGCCTGGCGCGCA CTCCGGAAGCAGGCATTTGGATCCTGGATCAGAAACCCACCAGATTACCACCAGTTTAAA TGAGAAAAGCTTGCTGGCAGCAGGTGTTCTCCGTCCCTTCATGCTGGATCACCTCCTTCC TACAGGCTGAACAAGCCTTAGCTTCCCCTGCAACTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCCGCTGCGCCGCGCGGCCTTCTTCCTCCCTTCGAGAGCGCGTGTCGAGGAGGGCCTCA GCACTAGCTCACACCATGTGGACGGCGGATGAGATTGCACGGCTGTGTTACGAGCACTAT GGGAGCAGGCTGCCCAAGCAAGGGAAGCCTGAGCCCAACCGTGAGTGGACGCTGCTCGCA GCCGTGGTGAAGATACAACCTGCAGCTGACCAGGTCTGCGACTGCCCTGACAGACCCGTG CAAGTGACAAAAGAAGTTGTCTCAATGGGAACAGGAACCAAATGCATAGGCCAGTCCAAA ATGAGGAAGAGCGGAGACATCCTCAATGATAGCCATGCCGAGGTCATAGCCAGAAGAAGT TTCCAGAGGTACCTCCTCCATCAGCTGCACTTGGCGGTCACTCTGAAGGAGGGTAGCATC TTTGTCCCAGGAACTCAGAGAGGACTGTGGAAACTCAGACCAGACACCTTGTTTGTGTTT TTCTCCAGCCATACACCCTGTGGCGATGCCTCCATCATTCCAATGCTTGAGTCTGAAGAT CAGCCTTGCTGTCCTGTCAGCAGAGATTGGGCCAATAACCCATCAGCAGAAGCCAATAAT AACCTAAAAGCCGCCCACAGTGGTGCCAAAGTGGTGGACATTTATAGAACTGGAGCTAAG TGTGTGCCTGGAGAAGCTGGTGACTTGGGAGGGCCTGGTGCTGCGTATCACCAAGTAGGA CTGCTCCGCGTGAAGCCAGGCCGAGGGGACAGGACTTGCTCCATGTCCTGCAGTGACAAG TTGGCACGGTGGAACGTTCTTGGATGCCAAGGGGCACTGCTGATGCACTTCCTGGAAGAG CCTGTCTACCTGTCAGCCGTGGTCATTGGAAAGTGCCCGTACAGCCAGGAGGCCATGCAG AGAGCACTGATTAGAAGGTGTCGGACCATCTCAGCTTTACCCAAAGGCTTTGGAGTTCAA GAAGTGAAAATACAGCAGTCAGATATACTATTTGAACAAAGCCGCTGTGCGGTGCAGGCA AAAAAGGCTGACAGCTCAGGCCGACTTGTTCCTTGTGGGGCAGCCATCAGCTGGAGTGCA GTTCCTGAGCAGCCTTTGGATGTTACTGCCAATGGTTTTCCACAGGGAACAACAAAGAAA GCAATCGGAAGCCCTCAGGCCAGATCCCGAATCAGCAAAGTAGAGCTCTTTAGATCATTC CAGAAGCTGCTAAGCAGTGTTTCAGAGGACAAGTGGCCAGACTCACTCAGGGTGCAGAAG CTAACGACGTACCAAGAATACAAAGAGGCTGCAGCCACTTACCAGGAGGCCTGGCGCGCA CTCCGGAAGCAGGCATTTGGATCCTGGATCAGAAACCCACCAGATTACCACCAGTTTAAA TGAGAAAAGCTTGCTGGCAGCAGGTGTTCTCCGTCCCTTCATGCTGGATCACCTCCTTCC TACAGGCTGAACAAGCCTTAGCTTCCCCTGCAACTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 102-221, + strand, RNAz p=0.573447 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 102-221, + strand, RNAz p=0.573447 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC002758, + |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 72-244, gnl|bosTau2|chr18 (1646582-1646754) | |
| 72-244, gnl|Hg17|chr16 (74212212-74212030) | |
| 72-244, gnl|Mm7|chr8 (110590432-110590250) | |
| 367-501, gnl|bosTau2|chr18 (1648785-1648919) | |
| 367-501, gnl|canFam2|chr5 (78200525-78200292) | |
| 367-501, gnl|echTel1|scaffold_88431 (3820-4049) | |
| 367-501, gnl|fr1|chrUn (201313587-201313809) | |
| 367-501, gnl|galGal2|chr11_random (1058727-1058547) | |
| 367-501, gnl|hg17|chr16 (74208496-74208728) | |
| 367-501, gnl|Hg17|chr16 (74208673-74208539) | |
| 367-501, gnl|loxAfr1|scaffold_45979 (8655-8855) | |
| 367-501, gnl|mm7|chr8 (110587122-110587326) | |
| 367-501, gnl|Mm7|chr8 (110587299-110587165) | |
| 367-501, gnl|monDom2|scaffold_23 (337972-338148) | |
| 367-501, gnl|oryCun1|scaffold_173333 (10071-10284) | |
| 367-501, gnl|panTro1|chr18 (68613999-68614231) | |
| 367-501, gnl|rheMac2|chr20 (73735252-73735485) | |
| 367-501, gnl|rn3|chr19 (41925974-41926165) | |
| 367-501, gnl|xenTro1|scaffold_79 (439897-439716) | |
| 614-920, gnl|bosTau2|chr18 (1655289-1655595) | |
| 614-920, gnl|canFam2|chr5 (78204060-78203753) | |
| 614-920, gnl|danRer3|chrUn (11165728-11165433) | |
| 614-920, gnl|dasNov1|scaffold_20453 (2380-2687) | |
| 614-920, gnl|echTel1|scaffold_88431 (1847-2154) | |
| 614-920, gnl|fr1|chrUn (201312784-201313084) | |
| 614-920, gnl|galGal2|chr11_random (1060717-1060417) | |
| 614-920, gnl|hg17|chr16 (74203629-74203936) | |
| 614-920, gnl|Hg17|chr16 (74203945-74203639) | |
| 614-920, gnl|loxAfr1|scaffold_45979 (5104-5411) | |
| 614-920, gnl|mm7|chr8 (110582193-110582501) | |
| 614-920, gnl|Mm7|chr8 (110582510-110582204) | |
| 614-920, gnl|monDom2|scaffold_23 (335726-336029) | |
| 614-920, gnl|oryCun1|scaffold_173333 (5375-5686) | |
| 614-920, gnl|panTro1|chr18 (68609138-68609445) | |
| 614-920, gnl|rheMac2|chr20 (73730286-73730593) | |
| 614-920, gnl|rn3|chr19 (41921584-41921890) | |
| 614-920, gnl|tetNig1|chr13 (725218-724919) | |
| 614-920, gnl|xenTro1|scaffold_79 (440603-440300) | |
| 1062-1163, gnl|bosTau2|chr18 (1657989-1658090) | |
| 1062-1163, gnl|canFam2|chr5 (78208214-78208076) | |
| 1062-1163, gnl|danRer3|chrUn (11173169-11173027) | |
| 1062-1163, gnl|echTel1|scaffold_321060 (76035-76172) | |
| 1062-1163, gnl|fr1|chrUn (201312166-201312296) | |
| 1062-1163, gnl|hg17|chr16 (74199619-74199757) | |
| 1062-1163, gnl|Hg17|chr16 (74199724-74199623) | |
| 1062-1163, gnl|loxAfr1|scaffold_45979 (2392-2525) | |
| 1062-1163, gnl|mm7|chr8 (110578080-110578214) | |
| 1062-1163, gnl|Mm7|chr8 (110578185-110578084) | |
| 1062-1163, gnl|monDom2|scaffold_23 (333967-334103) | |
| 1062-1163, gnl|oryCun1|scaffold_173333 (1428-1566) | |
| 1062-1163, gnl|panTro1|chr18 (68605128-68605266) | |
| 1062-1163, gnl|rheMac2|chr20 (73725977-73726115) | |
| 1062-1163, gnl|rn3|chr19 (41916701-41916834) | |
| 1062-1163, gnl|tetNig1|chr13 (725778-725677) | |
| 1062-1163, gnl|xenTro1|scaffold_79 (441903-441793) | |
| 1249-1464, gnl|bosTau2|chr18 (1674011-1674213) | |
| 1249-1464, gnl|Hg17|chr16 (74191749-74191540) | |
| 1249-1464, gnl|Mm7|chr8 (110568591-110568383) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 72-244, gnl|bosTau2|chr18 (1646582-1646754) | |
| 72-244, gnl|Hg17|chr16 (74212212-74212030) | |
| 72-244, gnl|Mm7|chr8 (110590432-110590250) | |
| 367-501, gnl|bosTau2|chr18 (1648785-1648919) | |
| 367-501, gnl|canFam2|chr5 (78200525-78200292) | |
| 367-501, gnl|echTel1|scaffold_88431 (3820-4049) | |
| 367-501, gnl|fr1|chrUn (201313587-201313809) | |
| 367-501, gnl|galGal2|chr11_random (1058727-1058547) | |
| 367-501, gnl|hg17|chr16 (74208496-74208728) | |
| 367-501, gnl|Hg17|chr16 (74208673-74208539) | |
| 367-501, gnl|loxAfr1|scaffold_45979 (8655-8855) | |
| 367-501, gnl|mm7|chr8 (110587122-110587326) | |
| 367-501, gnl|Mm7|chr8 (110587299-110587165) | |
| 367-501, gnl|monDom2|scaffold_23 (337972-338148) | |
| 367-501, gnl|oryCun1|scaffold_173333 (10071-10284) | |
| 367-501, gnl|panTro1|chr18 (68613999-68614231) | |
| 367-501, gnl|rheMac2|chr20 (73735252-73735485) | |
| 367-501, gnl|rn3|chr19 (41925974-41926165) | |
| 367-501, gnl|xenTro1|scaffold_79 (439897-439716) | |
| 614-920, gnl|bosTau2|chr18 (1655289-1655595) | |
| 614-920, gnl|canFam2|chr5 (78204060-78203753) | |
| 614-920, gnl|danRer3|chrUn (11165728-11165433) | |
| 614-920, gnl|dasNov1|scaffold_20453 (2380-2687) | |
| 614-920, gnl|echTel1|scaffold_88431 (1847-2154) | |
| 614-920, gnl|fr1|chrUn (201312784-201313084) | |
| 614-920, gnl|galGal2|chr11_random (1060717-1060417) | |
| 614-920, gnl|hg17|chr16 (74203629-74203936) | |
| 614-920, gnl|Hg17|chr16 (74203945-74203639) | |
| 614-920, gnl|loxAfr1|scaffold_45979 (5104-5411) | |
| 614-920, gnl|mm7|chr8 (110582193-110582501) | |
| 614-920, gnl|Mm7|chr8 (110582510-110582204) | |
| 614-920, gnl|monDom2|scaffold_23 (335726-336029) | |
| 614-920, gnl|oryCun1|scaffold_173333 (5375-5686) | |
| 614-920, gnl|panTro1|chr18 (68609138-68609445) | |
| 614-920, gnl|rheMac2|chr20 (73730286-73730593) | |
| 614-920, gnl|rn3|chr19 (41921584-41921890) | |
| 614-920, gnl|tetNig1|chr13 (725218-724919) | |
| 614-920, gnl|xenTro1|scaffold_79 (440603-440300) | |
| 1062-1163, gnl|bosTau2|chr18 (1657989-1658090) | |
| 1062-1163, gnl|canFam2|chr5 (78208214-78208076) | |
| 1062-1163, gnl|danRer3|chrUn (11173169-11173027) | |
| 1062-1163, gnl|echTel1|scaffold_321060 (76035-76172) | |
| 1062-1163, gnl|fr1|chrUn (201312166-201312296) | |
| 1062-1163, gnl|hg17|chr16 (74199619-74199757) | |
| 1062-1163, gnl|Hg17|chr16 (74199724-74199623) | |
| 1062-1163, gnl|loxAfr1|scaffold_45979 (2392-2525) | |
| 1062-1163, gnl|mm7|chr8 (110578080-110578214) | |
| 1062-1163, gnl|Mm7|chr8 (110578185-110578084) | |
| 1062-1163, gnl|monDom2|scaffold_23 (333967-334103) | |
| 1062-1163, gnl|oryCun1|scaffold_173333 (1428-1566) | |
| 1062-1163, gnl|panTro1|chr18 (68605128-68605266) | |
| 1062-1163, gnl|rheMac2|chr20 (73725977-73726115) | |
| 1062-1163, gnl|rn3|chr19 (41916701-41916834) | |
| 1062-1163, gnl|tetNig1|chr13 (725778-725677) | |
| 1062-1163, gnl|xenTro1|scaffold_79 (441903-441793) | |
| 1249-1464, gnl|bosTau2|chr18 (1674011-1674213) | |
| 1249-1464, gnl|Hg17|chr16 (74191749-74191540) | |
| 1249-1464, gnl|Mm7|chr8 (110568591-110568383) |