Non-Coding RNA Search

Ss1.1-Mixc-0034n20.5

Sequence:


               
               TTGCCTCCGAAGGCGGTAGCCCCCTGATCTCCACTCTATTTTTTTTGTCTCCTTTCTTAA
ATCTGCGGCACTGCTGACCTTGAGACCTGAGTTGACAAGCAGGTCTCATCAAGTGGCGCT
GAACAGGGACCTGAAGCAGTTCACAGTCTACAAGACTAATGGACAGGTGCTGACAGACGC
GGGGAATTCTGGCTGAAAAAGCGACAGACTGGAAAGTAACAAGAGATGAAGAAACCAAAA
GAATAATCAGGAAATTGAATGTAGAACAATTAATGCTCAACGAAAAGTGGCTTTTTGTAG
TTGTTACTATCAAAGGGTTCCCTTCAAGATTACCTCACAGATTTTCCAGGAGGTGAAGAT
GAAGACAAGGAGACTGAACAATGGATGTGTGTGTGTAACTGTCCCCTGACTCACAAAAGT
GCAATGGAAAGCAAACAAGTGAAGTGAAAGAATGCAAAGAGGGAGATGGAACAAAAGCTT
GCAGAGAAGTGCCAGTTAACAACTGACTATAAGAGAAGAATAATCTTCTGAGTAAATACA
GAGAAAGAGAGAAAGAGAAGGGGCAGGGATTTGTATTGAAGAAGCTTGCTCTGTACTTTG
AAACAAACTGAAAGAGAAAAAATAGTATTATTTATTTAAAATCACTCCCTGACTTGAATC
AATTCAGGATACAAAATAGTTTGCCTCCCTACTGATTATATCAATTTTTAAATTGCATTT
ATTGCTATTTTTCTTTTATCTAGAGATACGTATTGAGTGTCTGTTATATGCCAGAAACTA
TTCTCAGGAGAGCATTGAACAAAACAGAAAAACTCTGCACTCACACAGCTTAAATTCTAG
CTGACAATAGCTAAACAAACAAGCAAACATGATGTCATATAGTATAAGTGCTATGAAGAA
AAATCAGGTTAGGTACATGGAAAGTTTTTACTTTCATAGGGGTAGACAGGGAAACTGACT
TACCCCAAGATTAATACACACTAATGGTAGATTTTTTTTTAACAATAAAGATTAACAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCCTCCGAAGGCGGTAGCCCCCTGATCTCCACTCTATTTTTTTTGTCTCCTTTCTTAA
ATCTGCGGCACTGCTGACCTTGAGACCTGAGTTGACAAGCAGGTCTCATCAAGTGGCGCT
GAACAGGGACCTGAAGCAGTTCACAGTCTACAAGACTAATGGACAGGTGCTGACAGACGC
GGGGAATTCTGGCTGAAAAAGCGACAGACTGGAAAGTAACAAGAGATGAAGAAACCAAAA
GAATAATCAGGAAATTGAATGTAGAACAATTAATGCTCAACGAAAAGTGGCTTTTTGTAG
TTGTTACTATCAAAGGGTTCCCTTCAAGATTACCTCACAGATTTTCCAGGAGGTGAAGAT
GAAGACAAGGAGACTGAACAATGGATGTGTGTGTGTAACTGTCCCCTGACTCACAAAAGT
GCAATGGAAAGCAAACAAGTGAAGTGAAAGAATGCAAAGAGGGAGATGGAACAAAAGCTT
GCAGAGAAGTGCCAGTTAACAACTGACTATAAGAGAAGAATAATCTTCTGAGTAAATACA
GAGAAAGAGAGAAAGAGAAGGGGCAGGGATTTGTATTGAAGAAGCTTGCTCTGTACTTTG
AAACAAACTGAAAGAGAAAAAATAGTATTATTTATTTAAAATCACTCCCTGACTTGAATC
AATTCAGGATACAAAATAGTTTGCCTCCCTACTGATTATATCAATTTTTAAATTGCATTT
ATTGCTATTTTTCTTTTATCTAGAGATACGTATTGAGTGTCTGTTATATGCCAGAAACTA
TTCTCAGGAGAGCATTGAACAAAACAGAAAAACTCTGCACTCACACAGCTTAAATTCTAG
CTGACAATAGCTAAACAAACAAGCAAACATGATGTCATATAGTATAAGTGCTATGAAGAA
AAATCAGGTTAGGTACATGGAAAGTTTTTACTTTCATAGGGGTAGACAGGGAAACTGACT
TACCCCAAGATTAATACACACTAATGGTAGATTTTTTTTTAACAATAAAGATTAACAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               753-868, - strand, RNAz p=0.976165

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               753-868, - strand, RNAz p=0.976165

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               561-868, gnl|bosTau2|chrX (28704350-28704656)
               

               
               561-868, gnl|Hg17|chr2 (167255467-167255164)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               561-868, gnl|bosTau2|chrX (28704350-28704656)
               

               
               561-868, gnl|Hg17|chr2 (167255467-167255164)

	561-868, gnl\|bosTau2\|chrX (28704350-28704656)
	561-868, gnl\|Hg17\|chr2 (167255467-167255164)