Non-Coding RNA Search

Ss1.1-Mixc-0035e06.3

Sequence:


               
               ACGGCTCTCCAGCTTCCCTTCCCACGGCTCTGTCCCTGACACGAATCTGCACCCTCTGGT
CACTCTGTCCCTTCCTGACACTGGTGTCACGACCTTGGTTTGCTTCTCCTGTTTTGTGCT
TCCTCTTGACTCTCCCTGCATTATGCTTTGGGCAGCAAGATGAGACTCCTAAAGCATCTC
CCTTGACCTTGCTCACATCTCCAGTGCCTCCCCAAGACCCTCAGCTTCGTCATGATCCAT
AGGAACATGCTGGCCCTATTCCTGCCTCCTCCCTTGTGTGAGGAGATACTCAGAACGTGC
AAACCCTACTATTCCTCACAACCCAGTTGAAAACCCCACTTCCTCAGACCTTTCTCGACC
CTTCAGCCTATGGGCTTTCTCCTCTCAGCTCTTACAAGGAGCTCTCACTGTCCAGGCCAC
ACCTGGGCTTTCTCAAGGATTACCTTGATTATTTTTCCCTCAAGGCTATCTCTGCCTCCC
TCTACTCCAAACTTACTCACTTGCATGTAGCAAAAATGCAGGCACTTTGACAAATGAAAC
AAGAGCGATGTGGATTGCCTGCCTGGATAAAACCTGGGCTGGGCTGAGAGCTTGGGGGGC
TGTGCCCAGGGGCCATGTGGGCCCTGCTCACCGGCCTGAGGGCGGCCTCTCCAGAGAGCT
GATCCCGGGCATGGGATGGTGCCTCCAGCTCTCCCATAAGCCACCCACCTGACTTCATGG
TACTCTGGGCCTCCAAGCAGAGAAAGGTGGACAGGGCCGGTCAGTCTTGGCTGAGTGCAA
AGACTGATCTTTGGGTCTGAAAAAGATCAGGGAAGGGGGTGTGAGTCGATGGCTTCCTGA
GCTTTTCCATAACTGTGCTGGGTGAGTGCAGTTCTCACATGGGAAAAGAATGCGTGTGCA
CTGCCACAGATGTTCCAGACCGAACAGAAGGTCAAAATGTGGCTATTTCAGTCCCTGTAA
ACAAGGAAAGGGGTTTAGCTAGGAACGGAGTTCAAACCATGGAATGTATTAACAAGGACA
TTTTAAACAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGGCTCTCCAGCTTCCCTTCCCACGGCTCTGTCCCTGACACGAATCTGCACCCTCTGGT
CACTCTGTCCCTTCCTGACACTGGTGTCACGACCTTGGTTTGCTTCTCCTGTTTTGTGCT
TCCTCTTGACTCTCCCTGCATTATGCTTTGGGCAGCAAGATGAGACTCCTAAAGCATCTC
CCTTGACCTTGCTCACATCTCCAGTGCCTCCCCAAGACCCTCAGCTTCGTCATGATCCAT
AGGAACATGCTGGCCCTATTCCTGCCTCCTCCCTTGTGTGAGGAGATACTCAGAACGTGC
AAACCCTACTATTCCTCACAACCCAGTTGAAAACCCCACTTCCTCAGACCTTTCTCGACC
CTTCAGCCTATGGGCTTTCTCCTCTCAGCTCTTACAAGGAGCTCTCACTGTCCAGGCCAC
ACCTGGGCTTTCTCAAGGATTACCTTGATTATTTTTCCCTCAAGGCTATCTCTGCCTCCC
TCTACTCCAAACTTACTCACTTGCATGTAGCAAAAATGCAGGCACTTTGACAAATGAAAC
AAGAGCGATGTGGATTGCCTGCCTGGATAAAACCTGGGCTGGGCTGAGAGCTTGGGGGGC
TGTGCCCAGGGGCCATGTGGGCCCTGCTCACCGGCCTGAGGGCGGCCTCTCCAGAGAGCT
GATCCCGGGCATGGGATGGTGCCTCCAGCTCTCCCATAAGCCACCCACCTGACTTCATGG
TACTCTGGGCCTCCAAGCAGAGAAAGGTGGACAGGGCCGGTCAGTCTTGGCTGAGTGCAA
AGACTGATCTTTGGGTCTGAAAAAGATCAGGGAAGGGGGTGTGAGTCGATGGCTTCCTGA
GCTTTTCCATAACTGTGCTGGGTGAGTGCAGTTCTCACATGGGAAAAGAATGCGTGTGCA
CTGCCACAGATGTTCCAGACCGAACAGAAGGTCAAAATGTGGCTATTTCAGTCCCTGTAA
ACAAGGAAAGGGGTTTAGCTAGGAACGGAGTTCAAACCATGGAATGTATTAACAAGGACA
TTTTAAACAGAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               366-484, - strand, RNAz p=0.998404
               

               
               552-645, - strand, RNAz p=0.935413

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               366-484, - strand, RNAz p=0.998404
               

               
               552-645, - strand, RNAz p=0.935413

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK124859, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK124859, -

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               49-1029, gnl|bosTau2|chr27 (16391679-16390698)
               

               
               49-1029, gnl|Hg17|chr8 (30546810-30545802)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-1029, gnl|bosTau2|chr27 (16391679-16390698)
               

               
               49-1029, gnl|Hg17|chr8 (30546810-30545802)

	366-484, - strand, RNAz p=0.998404
	552-645, - strand, RNAz p=0.935413

	49-1029, gnl\|bosTau2\|chr27 (16391679-16390698)
	49-1029, gnl\|Hg17\|chr8 (30546810-30545802)