Non-Coding RNA Search

Ss1.1-Mixc-0035e20.5

Sequence:


               
               ATCTGTGATGTAAGGTCCTTACACTGGACAGCAAAGTTCCTCTCTGGGCAACTACAGTGA
GAACGGGAGGGACGAGGGAACAGTAGGACACTCGGAGAAGTAACGAGGTCATGCATAAGA
GTGACCAGGGAAATGTCCAGGGCAAGACTGTAGAGAAGTGGGGAAGAGTTTAAAATAACT
CGTGGAAGTCCATCACAAGAGAACAGAGAGCTAAAATCTTTAAAGCAAAAAAGATATAAA
TAAAAATTAGATCTTACTTTGACTTAGGTTCCCCCCAGAAAATATATGGCAATCTATGCT
ACAAAACTGCCCCCAAAGCCTACCAGGATCTTCCTGTCATTCTCAAGATCTACAAGTTAC
AGCCCGTATTTAAATGCACTGAAGAACAAATTCATGTCAAACATGTTAAGCATGTTAAGA
AGTTAACATGTCAAGAAGTTAAGGGTCTTCCCTTAACTTCTACAAAGTGGGCTCCCAAGA
GGAGCTCCTGCCCTGTCTGAGGTAGTTCCTTCCTCTCCCCCAAATAAACGTGCCATATCC
TATTTGGCTAAATCTGGAAAAAATGAAGCACAAGGTCATTATTCTGTAGCAAGAAAGGGA
AATTTTGCCCAGGAAAGGTGAAAAGCACCTGAGAGTTAAGTCAGGTGAGGAGAACAGGAA
GAAGGGTTGGCTTGGGCACCCTGGGTCGATGTGATGGGTCATGGTTGATTGGTCCTCATC
TTCTTTGCCTCACGTCTCTACTTCACATCTTTACTTCACGTCTTTACTTCAGGTCTTTAC
TTCACGTCTTTGTCCACACTGAGCCCTTAGCAGGGACCCTGCTGAGGGAGCCCAAAGATC
TCCAATTCTCGTAAAGGCACTCATCACCAAAACTTGTTGAAAATCCCAATGAGGTCAACA
AACACCCAAAAAAACAGTCCCTGGCACAATTTCCTGCTCTTCCCTAGACACCGATGGGAA
GTCAGAACACTACAGAAAATGTTCCCACCAAGTTAGAATCCGTTTCCCTAATATGGCCAG
GCCCTAAATATAGCCACAGTTTTTTTGTTCAAAATCCACTCCAGTTAGATTTGGGGATGG
AGAACATGGTGGCGGGCATATGAGCAGAGGGCACAGGAAAATGTGGCAGGTAAAACTCAC
CATCTCCACCAACATTCAGAGGGCTTTAATGTCCTCCACAAGGGCTACCTANGCAAAGGC
ACCTGCAACACATGACTTTTTCTCTCCAGGTTTTGCTCCCCCCCATGGAGTCTGGGTTGC
TGGGAGGGAGGAGAAGAAATTCTACCATTGGGAGAGAGGACACAGCATCACCAGGACCCA
AAGCAGTGAAAGGAATAAATTCCCCACTCAAATTATAAGGATTCCGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTGTGATGTAAGGTCCTTACACTGGACAGCAAAGTTCCTCTCTGGGCAACTACAGTGA
GAACGGGAGGGACGAGGGAACAGTAGGACACTCGGAGAAGTAACGAGGTCATGCATAAGA
GTGACCAGGGAAATGTCCAGGGCAAGACTGTAGAGAAGTGGGGAAGAGTTTAAAATAACT
CGTGGAAGTCCATCACAAGAGAACAGAGAGCTAAAATCTTTAAAGCAAAAAAGATATAAA
TAAAAATTAGATCTTACTTTGACTTAGGTTCCCCCCAGAAAATATATGGCAATCTATGCT
ACAAAACTGCCCCCAAAGCCTACCAGGATCTTCCTGTCATTCTCAAGATCTACAAGTTAC
AGCCCGTATTTAAATGCACTGAAGAACAAATTCATGTCAAACATGTTAAGCATGTTAAGA
AGTTAACATGTCAAGAAGTTAAGGGTCTTCCCTTAACTTCTACAAAGTGGGCTCCCAAGA
GGAGCTCCTGCCCTGTCTGAGGTAGTTCCTTCCTCTCCCCCAAATAAACGTGCCATATCC
TATTTGGCTAAATCTGGAAAAAATGAAGCACAAGGTCATTATTCTGTAGCAAGAAAGGGA
AATTTTGCCCAGGAAAGGTGAAAAGCACCTGAGAGTTAAGTCAGGTGAGGAGAACAGGAA
GAAGGGTTGGCTTGGGCACCCTGGGTCGATGTGATGGGTCATGGTTGATTGGTCCTCATC
TTCTTTGCCTCACGTCTCTACTTCACATCTTTACTTCACGTCTTTACTTCAGGTCTTTAC
TTCACGTCTTTGTCCACACTGAGCCCTTAGCAGGGACCCTGCTGAGGGAGCCCAAAGATC
TCCAATTCTCGTAAAGGCACTCATCACCAAAACTTGTTGAAAATCCCAATGAGGTCAACA
AACACCCAAAAAAACAGTCCCTGGCACAATTTCCTGCTCTTCCCTAGACACCGATGGGAA
GTCAGAACACTACAGAAAATGTTCCCACCAAGTTAGAATCCGTTTCCCTAATATGGCCAG
GCCCTAAATATAGCCACAGTTTTTTTGTTCAAAATCCACTCCAGTTAGATTTGGGGATGG
AGAACATGGTGGCGGGCATATGAGCAGAGGGCACAGGAAAATGTGGCAGGTAAAACTCAC
CATCTCCACCAACATTCAGAGGGCTTTAATGTCCTCCACAAGGGCTACCTANGCAAAGGC
ACCTGCAACACATGACTTTTTCTCTCCAGGTTTTGCTCCCCCCCATGGAGTCTGGGTTGC
TGGGAGGGAGGAGAAGAAATTCTACCATTGGGAGAGAGGACACAGCATCACCAGGACCCA
AAGCAGTGAAAGGAATAAATTCCCCACTCAAATTATAAGGATTCCGTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               587-693, + strand, RNAz p=0.713575
               

               
               801-898, - strand, RNAz p=0.813616

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               587-693, + strand, RNAz p=0.713575
               

               
               801-898, - strand, RNAz p=0.813616

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               3-723, gnl|bosTau2|chr17 (21944138-21943454)
               

               
               3-723, gnl|Hg17|chr4 (160050740-160050045)
               


               
               773-1127, gnl|bosTau2|chr17 (21943449-21943091)
               

               
               773-1127, gnl|Hg17|chr4 (160050040-160049660)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-723, gnl|bosTau2|chr17 (21944138-21943454)
               

               
               3-723, gnl|Hg17|chr4 (160050740-160050045)
               


               
               773-1127, gnl|bosTau2|chr17 (21943449-21943091)
               

               
               773-1127, gnl|Hg17|chr4 (160050040-160049660)

	587-693, + strand, RNAz p=0.713575
	801-898, - strand, RNAz p=0.813616

	3-723, gnl\|bosTau2\|chr17 (21944138-21943454)
	3-723, gnl\|Hg17\|chr4 (160050740-160050045)

	773-1127, gnl\|bosTau2\|chr17 (21943449-21943091)
	773-1127, gnl\|Hg17\|chr4 (160050040-160049660)