Non-Coding RNA Search

Ss1.1-Mixc-0035f02.5

Sequence:


               
               CGAGACGCAGGTGCGGCAGAGCGGCGGCGGCGCCCAGGGACCAGCTGCGCACCTGGAACG
CGCCCGGCTGTCTGGTCCTCAAGCAAAATGGGAAATGGTTCCGTGAAACCCAAACATTCC
AAGAATCCAGATGGCCACGCTGGGAACCTCACTGCCAGCGCCCTCCGGAGCAAGGTGACA
GAGCTGGAGAGGGAGCTGAGGAGGAAGGCTGCTGAGATCCAGGAGCGGGAGTACCATTTG
AAGGAGCTGCGAGAGCAGCTGTCCAAGCAGACTGTGGCCATTGCCGAGCTGACGGAGGAG
CTCCAGAACAAGTGCATCCAGCTGAACAAGCTTCAGGATGTGGTGCACATGCAGGGAGGA
AGCCCGCAGCAGGCCTCCCCGGATAAAGTGCCTCTCGAGGTCCACCGCAAGACCTCCGGC
TTGGTCTCCCTGCACAGCAGGCGGGGAGCAAAGGCTGGAGTGTCTGCTGAGCCGACCTCC
CGCACCTATGACCTCAACAAACCCCCCGAATTTTCTTTTGAGAAAGCCAGAGTCAGAAAG
GACTCCAGTGAGAAGAAGCTCATTACAGATGCTCTTAACAAAAATCAGTTTCTGAAGAGA
CTGGATCCTCAGCAGATCAAGGACATGGTGGAATGCATGTATGGGAGAAACTTCCAGCAG
GGCAGTTACATTATTAAGCAAGGAGAACCCGGAAACCACATCTACGTGCTGGCAGAGGGT
CGGCTGGAGGTGTTCCAAGGGGAGAAATTGCTCTCATCCATTCCTATGTGGACAACGTTT
GGGGAACTTGCCATTTTATACAACTGCACAAGGACAGCCTCTGTGAAAGCTATTACCAAT
GTTAAAACATGGGCACTAGATCGGGAAGTATTCCAGAACATAATGAGAAGAACAGCTCAA
GCTAGAGATGAACAGTACAGAAATTTCCTCAGAAGGAATACTACGACAAAGGAGAAGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGACGCAGGTGCGGCAGAGCGGCGGCGGCGCCCAGGGACCAGCTGCGCACCTGGAACG
CGCCCGGCTGTCTGGTCCTCAAGCAAAATGGGAAATGGTTCCGTGAAACCCAAACATTCC
AAGAATCCAGATGGCCACGCTGGGAACCTCACTGCCAGCGCCCTCCGGAGCAAGGTGACA
GAGCTGGAGAGGGAGCTGAGGAGGAAGGCTGCTGAGATCCAGGAGCGGGAGTACCATTTG
AAGGAGCTGCGAGAGCAGCTGTCCAAGCAGACTGTGGCCATTGCCGAGCTGACGGAGGAG
CTCCAGAACAAGTGCATCCAGCTGAACAAGCTTCAGGATGTGGTGCACATGCAGGGAGGA
AGCCCGCAGCAGGCCTCCCCGGATAAAGTGCCTCTCGAGGTCCACCGCAAGACCTCCGGC
TTGGTCTCCCTGCACAGCAGGCGGGGAGCAAAGGCTGGAGTGTCTGCTGAGCCGACCTCC
CGCACCTATGACCTCAACAAACCCCCCGAATTTTCTTTTGAGAAAGCCAGAGTCAGAAAG
GACTCCAGTGAGAAGAAGCTCATTACAGATGCTCTTAACAAAAATCAGTTTCTGAAGAGA
CTGGATCCTCAGCAGATCAAGGACATGGTGGAATGCATGTATGGGAGAAACTTCCAGCAG
GGCAGTTACATTATTAAGCAAGGAGAACCCGGAAACCACATCTACGTGCTGGCAGAGGGT
CGGCTGGAGGTGTTCCAAGGGGAGAAATTGCTCTCATCCATTCCTATGTGGACAACGTTT
GGGGAACTTGCCATTTTATACAACTGCACAAGGACAGCCTCTGTGAAAGCTATTACCAAT
GTTAAAACATGGGCACTAGATCGGGAAGTATTCCAGAACATAATGAGAAGAACAGCTCAA
GCTAGAGATGAACAGTACAGAAATTTCCTCAGAAGGAATACTACGACAAAGGAGAAGGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9MYZ8_RABIT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9MYZ8_RABIT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               188-467, + strand, RNAz p=0.83544

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               188-467, + strand, RNAz p=0.83544

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               68-548, gnl|bosTau2|chr6 (53412764-53412284)
               

               
               68-548, gnl|Hg17|chr4 (82483398-82482920)
               

               
               68-548, gnl|Mm7|chr5 (98239655-98239175)
               


               
               826-948, gnl|bosTau2|chr6 (53378121-53377998)
               

               
               826-948, gnl|Hg17|chr4 (82448105-82447982)
               

               
               826-948, gnl|Mm7|chr5 (98207207-98207084)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               68-548, gnl|bosTau2|chr6 (53412764-53412284)
               

               
               68-548, gnl|Hg17|chr4 (82483398-82482920)
               

               
               68-548, gnl|Mm7|chr5 (98239655-98239175)
               


               
               826-948, gnl|bosTau2|chr6 (53378121-53377998)
               

               
               826-948, gnl|Hg17|chr4 (82448105-82447982)
               

               
               826-948, gnl|Mm7|chr5 (98207207-98207084)

	68-548, gnl\|bosTau2\|chr6 (53412764-53412284)
	68-548, gnl\|Hg17\|chr4 (82483398-82482920)
	68-548, gnl\|Mm7\|chr5 (98239655-98239175)

	826-948, gnl\|bosTau2\|chr6 (53378121-53377998)
	826-948, gnl\|Hg17\|chr4 (82448105-82447982)
	826-948, gnl\|Mm7\|chr5 (98207207-98207084)