Non-Coding RNA Search

Ss1.1-Mixc-0035l03.3

Sequence:


               
               CTTTTTCACAGGTGTGAAGGGGCTCTGTGAGGATTACCAGTTTATTAGAATGGCTTACCA
TGGACCCCACACGAAACTCACCAGCTGCTTTTCTCCTCCCTTGCTCAGCCTTTGGGGGTG
TCAACAGGTGTTCATGGAGCCAAGGATATGGATACAGTGATAAGCAAAAACAAAAATGCT
CCCTTGTGGAGAATATGGTCTAGTGAGGGAGAAAGACATCAATCACTTGATCATACTAAT
AGAAAATCACATTGTGACCAGTGCTGTGAAGAAGAGGAATGCACCGCAATGAATGAAAAC
CTCTCATAGGATGGTTCCATCTGGTCAAGGATAGGTGGAAGATTTTCCTAAGGAAGTGAC
TCATGAGCTGAGGTAACGAGTGAAGAGGGAAGGAAAGAGTGTGCAAGACAGAGGAATAGC
AAATGCAGGTGCCCAGGATCAGGAGAAGCATAGCAAATTCAAGGGCTTTTAAGGAAAGCC
AGTGTGGTTGGAAGCTAGGAGGCATATCCTCCCACAATGGACATTTCACTACCCTAGAGT
GCTCACTGTCCTTTGATGACTTCAAGATTTTATTAGGTACTCCTTGTAAATAATTTATTT
CAAAGCTGGGTAAGGCTGGTCATGCTGCCAATCCCTGGAGAAGCCATCCACTCACAGTGA
GTTCCTTGTGTCCAGATCTATGTGTTTAGAGTCAACAATGGAATTATAAAAAGTCAGAGC
CAGGTGAGACCTCAGAGGCTACTTAGTGCCAGGTTCCCTGTTCCAGATGAAAGAATTCAA
GTCTGAAACATCCCTACAGTAAATTGCTTCTCAGAATGGATGTTCTTTTAGGATGGCTCA
CTTGCAGCTTTTTTTCATCTCCCAAAAAAAAATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTTCACAGGTGTGAAGGGGCTCTGTGAGGATTACCAGTTTATTAGAATGGCTTACCA
TGGACCCCACACGAAACTCACCAGCTGCTTTTCTCCTCCCTTGCTCAGCCTTTGGGGGTG
TCAACAGGTGTTCATGGAGCCAAGGATATGGATACAGTGATAAGCAAAAACAAAAATGCT
CCCTTGTGGAGAATATGGTCTAGTGAGGGAGAAAGACATCAATCACTTGATCATACTAAT
AGAAAATCACATTGTGACCAGTGCTGTGAAGAAGAGGAATGCACCGCAATGAATGAAAAC
CTCTCATAGGATGGTTCCATCTGGTCAAGGATAGGTGGAAGATTTTCCTAAGGAAGTGAC
TCATGAGCTGAGGTAACGAGTGAAGAGGGAAGGAAAGAGTGTGCAAGACAGAGGAATAGC
AAATGCAGGTGCCCAGGATCAGGAGAAGCATAGCAAATTCAAGGGCTTTTAAGGAAAGCC
AGTGTGGTTGGAAGCTAGGAGGCATATCCTCCCACAATGGACATTTCACTACCCTAGAGT
GCTCACTGTCCTTTGATGACTTCAAGATTTTATTAGGTACTCCTTGTAAATAATTTATTT
CAAAGCTGGGTAAGGCTGGTCATGCTGCCAATCCCTGGAGAAGCCATCCACTCACAGTGA
GTTCCTTGTGTCCAGATCTATGTGTTTAGAGTCAACAATGGAATTATAAAAAGTCAGAGC
CAGGTGAGACCTCAGAGGCTACTTAGTGCCAGGTTCCCTGTTCCAGATGAAAGAATTCAA
GTCTGAAACATCCCTACAGTAAATTGCTTCTCAGAATGGATGTTCTTTTAGGATGGCTCA
CTTGCAGCTTTTTTTCATCTCCCAAAAAAAAATTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               136-240, + strand, RNAz p=0.552557

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               136-240, + strand, RNAz p=0.552557

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-872, gnl|bosTau2|chr10 (50091540-50090657)
               

               
               2-872, gnl|Hg17|chr14 (61028085-61028994)
               

               
               2-872, gnl|Mm7|chr12 (71678780-71679605)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-872, gnl|bosTau2|chr10 (50091540-50090657)
               

               
               2-872, gnl|Hg17|chr14 (61028085-61028994)
               

               
               2-872, gnl|Mm7|chr12 (71678780-71679605)

	2-872, gnl\|bosTau2\|chr10 (50091540-50090657)
	2-872, gnl\|Hg17\|chr14 (61028085-61028994)
	2-872, gnl\|Mm7\|chr12 (71678780-71679605)