Non-Coding RNA Search

Ss1.1-Mixc-0038,f12.5

Sequence:


               
               GTCGCCAGCCGCCTCAAAGAGCTGCAGCCCCAGGCTGGGGTCCCCGGTGTACAGGGCCGC
GTTCTGTGCCACCTGGATGTACAAGTCCACCAGCTCGTTCTGCTGCAGGATGTAGTAGAT
CTTCCCCGCCTGCAGCCAGGCCTGTGCCTCCTTGTCCTTCTGCTGGAGGTCAATGAACAC
CCCCAGGCTGCGCTTGGTATAGTCCAGCGCCGATTTGTAGGCCCGCTCGGTGCCCAGGCA
CAAGTAGAGCTGGCTGATGGTCTCCAGGAGCTGCCCCTCCAGTGCCTTGTCGGCCACCCT
GCGGGCCAGCGAGAGCTGGAACTCGTGGTAGACGACACACTGGGCCTCGCTGGGCATGAC
TGTGCTGTAGAAGTGACACAGCCGTTGGACGGCCTGCAGCTGGCTCTCGAGATGGTCCCC
CTCCACGGCGACCAGAAAGGCCCACTCGTAGTAGCACTTGCCCTGCCGCGCCAGGGCCCT
GCGCGTGCACAGCTGGCCCAGCCGCAGGAGCACCTGCGTGAAGTCGGGGCCGCACTCGCC
GCTGGGCAGCCGCGAGAAGAGCTTCACAGACTCCAGGAAGTAGTGCTGGGCCAGTCCGCC
GGCGCCCGCCTGCAGGCACAGGGCCCCGAAGTTGGCCAGGACCACGGCCTGGTTCCGCGC
GTGGCCCAGGCGCCTGGCGACACGCAGGGCGCGGTAGTAGCCCTCGGCCGCCCGGCGGGT
CCGGCCTGTCCTCTTCAGGGCGATGGCTGTCATGTTGGCGATCACCCCCTCCTGGTCCAG
GGTGGCCGCCGCCGCCTCCAGGATGGACTCCAGGATGGCCAGGGCCAGCGGGCTTTGCCT
GTGAAGCACGTGCAGCCAGGCGAGGGCCACCAGGTGGTCCACGACCCGGCGGCCGCCAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCGCCAGCCGCCTCAAAGAGCTGCAGCCCCAGGCTGGGGTCCCCGGTGTACAGGGCCGC
GTTCTGTGCCACCTGGATGTACAAGTCCACCAGCTCGTTCTGCTGCAGGATGTAGTAGAT
CTTCCCCGCCTGCAGCCAGGCCTGTGCCTCCTTGTCCTTCTGCTGGAGGTCAATGAACAC
CCCCAGGCTGCGCTTGGTATAGTCCAGCGCCGATTTGTAGGCCCGCTCGGTGCCCAGGCA
CAAGTAGAGCTGGCTGATGGTCTCCAGGAGCTGCCCCTCCAGTGCCTTGTCGGCCACCCT
GCGGGCCAGCGAGAGCTGGAACTCGTGGTAGACGACACACTGGGCCTCGCTGGGCATGAC
TGTGCTGTAGAAGTGACACAGCCGTTGGACGGCCTGCAGCTGGCTCTCGAGATGGTCCCC
CTCCACGGCGACCAGAAAGGCCCACTCGTAGTAGCACTTGCCCTGCCGCGCCAGGGCCCT
GCGCGTGCACAGCTGGCCCAGCCGCAGGAGCACCTGCGTGAAGTCGGGGCCGCACTCGCC
GCTGGGCAGCCGCGAGAAGAGCTTCACAGACTCCAGGAAGTAGTGCTGGGCCAGTCCGCC
GGCGCCCGCCTGCAGGCACAGGGCCCCGAAGTTGGCCAGGACCACGGCCTGGTTCCGCGC
GTGGCCCAGGCGCCTGGCGACACGCAGGGCGCGGTAGTAGCCCTCGGCCGCCCGGCGGGT
CCGGCCTGTCCTCTTCAGGGCGATGGCTGTCATGTTGGCGATCACCCCCTCCTGGTCCAG
GGTGGCCGCCGCCGCCTCCAGGATGGACTCCAGGATGGCCAGGGCCAGCGGGCTTTGCCT
GTGAAGCACGTGCAGCCAGGCGAGGGCCACCAGGTGGTCCACGACCCGGCGGCCGCCAGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55623790|ref|XP_517598.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55623790|ref|XP_517598.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               483-602, - strand, RNAz p=0.761605
               

               
               763-897, - strand, RNAz p=0.795118

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               483-602, - strand, RNAz p=0.761605
               

               
               763-897, - strand, RNAz p=0.795118

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               1-222, gnl|bosTau2|chr6 (65513625-65513404)
               

               
               1-222, gnl|canFam2|chr3 (62858850-62859007)
               

               
               1-222, gnl|danRer3|chr5 (70379224-70379063)
               

               
               1-222, gnl|dasNov1|scaffold_83481 (3901-3724)
               

               
               1-222, gnl|echTel1|scaffold_296252 (5157-5334)
               

               
               1-222, gnl|fr1|chrUn (190783835-190783996)
               

               
               1-222, gnl|galGal2|chr4 (81137574-81137745)
               

               
               1-222, gnl|hg17|chr4 (8353158-8353336)
               

               
               1-222, gnl|Hg17|chr4 (8355302-8353162)
               

               
               1-222, gnl|mm7|chr5 (34764400-34764223)
               

               
               1-222, gnl|Mm7|chr5 (34763030-34764394)
               

               
               1-222, gnl|monDom2|scaffold_10 (37501099-37501262)
               

               
               1-222, gnl|oryCun1|scaffold_177227 (2129-2292)
               

               
               1-222, gnl|panTro1|chr3_random (51899532-51899354)
               

               
               1-222, gnl|rheMac2|chr11 (11296974-11297152)
               

               
               1-222, gnl|rn3|chr14 (80681017-80681194)
               

               
               1-222, gnl|tetNig1|chrUn_random (99730019-99729862)
               

               
               1-222, gnl|xenTro1|scaffold_158 (908054-908216)
               


               
               404-897, gnl|bosTau2|chr6 (65509113-65508620)
               

               
               404-897, gnl|Hg17|chr4 (8348443-8347950)
               

               
               404-897, gnl|Mm7|chr5 (34768255-34768747)

Aligned organism(s): 21 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-222, gnl|bosTau2|chr6 (65513625-65513404)
               

               
               1-222, gnl|canFam2|chr3 (62858850-62859007)
               

               
               1-222, gnl|danRer3|chr5 (70379224-70379063)
               

               
               1-222, gnl|dasNov1|scaffold_83481 (3901-3724)
               

               
               1-222, gnl|echTel1|scaffold_296252 (5157-5334)
               

               
               1-222, gnl|fr1|chrUn (190783835-190783996)
               

               
               1-222, gnl|galGal2|chr4 (81137574-81137745)
               

               
               1-222, gnl|hg17|chr4 (8353158-8353336)
               

               
               1-222, gnl|Hg17|chr4 (8355302-8353162)
               

               
               1-222, gnl|mm7|chr5 (34764400-34764223)
               

               
               1-222, gnl|Mm7|chr5 (34763030-34764394)
               

               
               1-222, gnl|monDom2|scaffold_10 (37501099-37501262)
               

               
               1-222, gnl|oryCun1|scaffold_177227 (2129-2292)
               

               
               1-222, gnl|panTro1|chr3_random (51899532-51899354)
               

               
               1-222, gnl|rheMac2|chr11 (11296974-11297152)
               

               
               1-222, gnl|rn3|chr14 (80681017-80681194)
               

               
               1-222, gnl|tetNig1|chrUn_random (99730019-99729862)
               

               
               1-222, gnl|xenTro1|scaffold_158 (908054-908216)
               


               
               404-897, gnl|bosTau2|chr6 (65509113-65508620)
               

               
               404-897, gnl|Hg17|chr4 (8348443-8347950)
               

               
               404-897, gnl|Mm7|chr5 (34768255-34768747)

	483-602, - strand, RNAz p=0.761605
	763-897, - strand, RNAz p=0.795118

	1-222, gnl\|bosTau2\|chr6 (65513625-65513404)
	1-222, gnl\|canFam2\|chr3 (62858850-62859007)
	1-222, gnl\|danRer3\|chr5 (70379224-70379063)
	1-222, gnl\|dasNov1\|scaffold_83481 (3901-3724)
	1-222, gnl\|echTel1\|scaffold_296252 (5157-5334)
	1-222, gnl\|fr1\|chrUn (190783835-190783996)
	1-222, gnl\|galGal2\|chr4 (81137574-81137745)
	1-222, gnl\|hg17\|chr4 (8353158-8353336)
	1-222, gnl\|Hg17\|chr4 (8355302-8353162)
	1-222, gnl\|mm7\|chr5 (34764400-34764223)
	1-222, gnl\|Mm7\|chr5 (34763030-34764394)
	1-222, gnl\|monDom2\|scaffold_10 (37501099-37501262)
	1-222, gnl\|oryCun1\|scaffold_177227 (2129-2292)
	1-222, gnl\|panTro1\|chr3_random (51899532-51899354)
	1-222, gnl\|rheMac2\|chr11 (11296974-11297152)
	1-222, gnl\|rn3\|chr14 (80681017-80681194)
	1-222, gnl\|tetNig1\|chrUn_random (99730019-99729862)
	1-222, gnl\|xenTro1\|scaffold_158 (908054-908216)

	404-897, gnl\|bosTau2\|chr6 (65509113-65508620)
	404-897, gnl\|Hg17\|chr4 (8348443-8347950)
	404-897, gnl\|Mm7\|chr5 (34768255-34768747)