Ss1.1-Mixc-0040,g16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTGGCAGCAGCTGTGGGAGACCCCAACGCTGTTGTGGGAGGCACCACGTCTTGGGCTGG ACACGGCGCAGGGCCTAGAGCTGCTGAGTCTGCTAGGCACCCTGCTAGCCCTGGGAGCAC TGCTGCTAAGCCAGCTGCGCCATCTCCTAACCTACCTGCTGCTCTGGGCCGCCTACCTGT CTGTCTGCCAGGTGGGCCAGGTGTTTCTTTATTTCCAGTGGGACTCCCTGCTCCTGGAGA CTGGCTTCCTGGCAGTGCTGGTGGCACCTCTAAGGCAGCCCCCCCACCGCAAGCAGGCGC CCCAGAGCAAGCTGGCAGGGGCCTCACCCCACGAAGGCCTCTCCTTCTGGCTTGTGCGCT GGTTGCTGTTTCGCCTCATGTTTGCCTCGGGTGTGGTCAAGCTGACCAGCCGTTGCCCTG CGTGGTGGGGGCTCACGGCCCTCACCTACCACTATGAGACACAGTGCCTGCCCACGCCTG CTGCCTGGTTTGCCCACCACCTGCCCGTCTGGCTGCACAAGCTCAGCGTGGTGGCCACTT TCCTCATTGAGATTGCAGTGCCTCCTCTGTTCTTCGCTCCCATCCGTCGTCTGCGCCTGG CTGCCTTCTACTCCCAGGTCCTGCTGCAAGTCCTGATTATCCTCACTGGCAACTATAACT TCTTCAACCTGCTCACCCTGGTGCTCACCACCGCCCTCCTGGACGATGTACACCTGCTGG CCGAGTCTGGCAGCAGCCGGCGCAAGAAGATGCCCACCTCCTGGCCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTGGCAGCAGCTGTGGGAGACCCCAACGCTGTTGTGGGAGGCACCACGTCTTGGGCTGG ACACGGCGCAGGGCCTAGAGCTGCTGAGTCTGCTAGGCACCCTGCTAGCCCTGGGAGCAC TGCTGCTAAGCCAGCTGCGCCATCTCCTAACCTACCTGCTGCTCTGGGCCGCCTACCTGT CTGTCTGCCAGGTGGGCCAGGTGTTTCTTTATTTCCAGTGGGACTCCCTGCTCCTGGAGA CTGGCTTCCTGGCAGTGCTGGTGGCACCTCTAAGGCAGCCCCCCCACCGCAAGCAGGCGC CCCAGAGCAAGCTGGCAGGGGCCTCACCCCACGAAGGCCTCTCCTTCTGGCTTGTGCGCT GGTTGCTGTTTCGCCTCATGTTTGCCTCGGGTGTGGTCAAGCTGACCAGCCGTTGCCCTG CGTGGTGGGGGCTCACGGCCCTCACCTACCACTATGAGACACAGTGCCTGCCCACGCCTG CTGCCTGGTTTGCCCACCACCTGCCCGTCTGGCTGCACAAGCTCAGCGTGGTGGCCACTT TCCTCATTGAGATTGCAGTGCCTCCTCTGTTCTTCGCTCCCATCCGTCGTCTGCGCCTGG CTGCCTTCTACTCCCAGGTCCTGCTGCAAGTCCTGATTATCCTCACTGGCAACTATAACT TCTTCAACCTGCTCACCCTGGTGCTCACCACCGCCCTCCTGGACGATGTACACCTGCTGG CCGAGTCTGGCAGCAGCCGGCGCAAGAAGATGCCCACCTCCTGGCCCA |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 3-121, + strand, RNAz p=0.956462 | |
| 50-155, - strand, RNAz p=0.975769 | |
| 205-323, - strand, RNAz p=0.7337 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 3-121, + strand, RNAz p=0.956462 | |
| 50-155, - strand, RNAz p=0.975769 | |
| 205-323, - strand, RNAz p=0.7337 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 205-304, - strand, RNAmicro p=0.955934 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 3-192, gnl|bosTau2|chr5 (75779561-75779750) | |
| 3-192, gnl|canFam2|chr10 (19790701-19790441) | |
| 3-192, gnl|danRer3|chr19 (18500304-18500045) | |
| 3-192, gnl|dasNov1|scaffold_126364 (4708-4970) | |
| 3-192, gnl|fr1|chrUn (21612317-21612575) | |
| 3-192, gnl|hg17|chr22 (49235353-49235614) | |
| 3-192, gnl|Hg17|chr22 (49235543-49235354) | |
| 3-192, gnl|loxAfr1|scaffold_60817 (8155-8416) | |
| 3-192, gnl|mm7|chr15 (89437440-89437701) | |
| 3-192, gnl|Mm7|chr15 (89437630-89437441) | |
| 3-192, gnl|oryCun1|scaffold_138846 (1677-1436) | |
| 3-192, gnl|rheMac2|chr10 (94529274-94529535) | |
| 3-192, gnl|rn3|chr7 (127683797-127684058) | |
| 3-192, gnl|tetNig1|chr13 (3265212-3264954) | |
| 3-192, gnl|xenTro1|scaffold_534 (879655-879916) | |
| 205-436, gnl|bosTau2|chr5 (75780004-75780235) | |
| 205-436, gnl|canFam2|chr10 (19791203-19790967) | |
| 205-436, gnl|danRer3|chr19 (18503897-18503687) | |
| 205-436, gnl|dasNov1|scaffold_126364 (4204-4446) | |
| 205-436, gnl|fr1|chrUn (21611925-21612136) | |
| 205-436, gnl|galGal2|chrUn (139786971-139787185) | |
| 205-436, gnl|hg17|chr22 (49234854-49235090) | |
| 205-436, gnl|Hg17|chr22 (49235091-49234860) | |
| 205-436, gnl|loxAfr1|scaffold_60817 (7689-7924) | |
| 205-436, gnl|mm7|chr15 (89436957-89437189) | |
| 205-436, gnl|Mm7|chr15 (89437190-89436963) | |
| 205-436, gnl|oryCun1|scaffold_138846 (2166-1924) | |
| 205-436, gnl|rheMac2|chr10 (94528799-94529035) | |
| 205-436, gnl|rn3|chr7 (127683330-127683563) | |
| 205-436, gnl|tetNig1|chr13 (3265597-3265386) | |
| 205-436, gnl|xenTro1|scaffold_534 (876041-876256) | |
| 438-620, gnl|bosTau2|chr5 (75780312-75780494) | |
| 438-620, gnl|Hg17|chr22 (49234787-49234605) | |
| 438-620, gnl|Mm7|chr15 (89436886-89436704) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-192, gnl|bosTau2|chr5 (75779561-75779750) | |
| 3-192, gnl|canFam2|chr10 (19790701-19790441) | |
| 3-192, gnl|danRer3|chr19 (18500304-18500045) | |
| 3-192, gnl|dasNov1|scaffold_126364 (4708-4970) | |
| 3-192, gnl|fr1|chrUn (21612317-21612575) | |
| 3-192, gnl|hg17|chr22 (49235353-49235614) | |
| 3-192, gnl|Hg17|chr22 (49235543-49235354) | |
| 3-192, gnl|loxAfr1|scaffold_60817 (8155-8416) | |
| 3-192, gnl|mm7|chr15 (89437440-89437701) | |
| 3-192, gnl|Mm7|chr15 (89437630-89437441) | |
| 3-192, gnl|oryCun1|scaffold_138846 (1677-1436) | |
| 3-192, gnl|rheMac2|chr10 (94529274-94529535) | |
| 3-192, gnl|rn3|chr7 (127683797-127684058) | |
| 3-192, gnl|tetNig1|chr13 (3265212-3264954) | |
| 3-192, gnl|xenTro1|scaffold_534 (879655-879916) | |
| 205-436, gnl|bosTau2|chr5 (75780004-75780235) | |
| 205-436, gnl|canFam2|chr10 (19791203-19790967) | |
| 205-436, gnl|danRer3|chr19 (18503897-18503687) | |
| 205-436, gnl|dasNov1|scaffold_126364 (4204-4446) | |
| 205-436, gnl|fr1|chrUn (21611925-21612136) | |
| 205-436, gnl|galGal2|chrUn (139786971-139787185) | |
| 205-436, gnl|hg17|chr22 (49234854-49235090) | |
| 205-436, gnl|Hg17|chr22 (49235091-49234860) | |
| 205-436, gnl|loxAfr1|scaffold_60817 (7689-7924) | |
| 205-436, gnl|mm7|chr15 (89436957-89437189) | |
| 205-436, gnl|Mm7|chr15 (89437190-89436963) | |
| 205-436, gnl|oryCun1|scaffold_138846 (2166-1924) | |
| 205-436, gnl|rheMac2|chr10 (94528799-94529035) | |
| 205-436, gnl|rn3|chr7 (127683330-127683563) | |
| 205-436, gnl|tetNig1|chr13 (3265597-3265386) | |
| 205-436, gnl|xenTro1|scaffold_534 (876041-876256) | |
| 438-620, gnl|bosTau2|chr5 (75780312-75780494) | |
| 438-620, gnl|Hg17|chr22 (49234787-49234605) | |
| 438-620, gnl|Mm7|chr15 (89436886-89436704) |