Non-Coding RNA Search

Ss1.1-Mixc-0041,m21.5

Sequence:


               
               CGCACACACACATAAGAGAGAGAAACTTTTCGAGGCTTATATTCAACCATGGACTTTATA
AGCCAGTGTTGCCTAAGTATTAAAACATTGGATTATCCTGAAGTGTACCAGGAAAGGATT
TTATAATGCTTAGAAAAAAAGAAAAAATAAAACACAAAAAAATACCTTTGATGCATTGAA
TGTTCTTTCATAGCTGTCGTTGTTGACTATAATATACACAGATAGCAACGTGCAGGGATT
TTTACCCAGCCAGCTAACTTTACTACCTTCCTTGAAGGTGGGTCTTTTTAAGATGACCAT
TCGCTCATTTGAAGAAGAAAAACAAAAAACAAAAAAAAAATAATAAAAATAAAACAATTT
TTACAAAGTAATGGGATTCAAAGAAAGAAAAAAAAAGATTTTTCTTTTTTGTCAAAATGT
TGATCCAATCAGATTGGTTAAAAACCCCCACACAAATTAAAGAGGAATAATAAAAATTGC
AAAAATTACAAAAACTTTTGCAAATGTTTNTATTTTTCCTTTTTTCTTTTATATCATGTG
AACTAAAACAGTCTTCTGTTAGGGGATGGGGGCAAGGGGGATACCTGATGACATTAACAA
TTTAATAACATTAACATTGTTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCACACACACATAAGAGAGAGAAACTTTTCGAGGCTTATATTCAACCATGGACTTTATA
AGCCAGTGTTGCCTAAGTATTAAAACATTGGATTATCCTGAAGTGTACCAGGAAAGGATT
TTATAATGCTTAGAAAAAAAGAAAAAATAAAACACAAAAAAATACCTTTGATGCATTGAA
TGTTCTTTCATAGCTGTCGTTGTTGACTATAATATACACAGATAGCAACGTGCAGGGATT
TTTACCCAGCCAGCTAACTTTACTACCTTCCTTGAAGGTGGGTCTTTTTAAGATGACCAT
TCGCTCATTTGAAGAAGAAAAACAAAAAACAAAAAAAAAATAATAAAAATAAAACAATTT
TTACAAAGTAATGGGATTCAAAGAAAGAAAAAAAAAGATTTTTCTTTTTTGTCAAAATGT
TGATCCAATCAGATTGGTTAAAAACCCCCACACAAATTAAAGAGGAATAATAAAAATTGC
AAAAATTACAAAAACTTTTGCAAATGTTTNTATTTTTCCTTTTTTCTTTTATATCATGTG
AACTAAAACAGTCTTCTGTTAGGGGATGGGGGCAAGGGGGATACCTGATGACATTAACAA
TTTAATAACATTAACATTGTTGCC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               38-157, - strand, RNAz p=0.705309
               

               
               237-571, - strand, RNAz p=0.992993

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-157, - strand, RNAz p=0.705309
               

               
               237-571, - strand, RNAz p=0.992993

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               473-575, - strand, RNAmicro p=0.998353
               

               
               480-570, + strand, RNAmicro p=0.99425

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               473-575, - strand, RNAmicro p=0.998353
               

               
               480-570, + strand, RNAmicro p=0.99425

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               237-505, DRA02G08 Rat DRG Library Rattus norvegicus cDNA clone DRA02G08 5', 
(gb|BG662749.1|), blast E-value=2e-30, identity=94.85% 
               

               
               237-505, DRAABC08 Rat DRG Library Rattus norvegicus cDNA clone DRAABC08 5', 
(gb|BG663989.1|), blast E-value=2e-30, identity=94.85% 
               

               
               237-505, DRAAEA01 Rat DRG Library Rattus norvegicus cDNA clone DRAAEA01 5', 
(gb|BG664119.1|), blast E-value=3e-23, identity=91.75% 
               

               
               237-505, AMGNNUC (gb|CB580183.1|), blast E-value=2e-30, identity=94.85%
               

               
               237-505, AGENCOURT_26730028 NIH_MGC_255 Rattus norvegicus cDNA clone 
(gb|CO400909.1|), blast E-value=2e-30, identity=94.85% 
               

               
               411-571, UMC-pd3end3-013-a07 Endometrium gilt D3 of estrous cycle pd3end Sus 
(gb|CO989232.1|), blast E-value=0.000000000002, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               237-505, DRA02G08 Rat DRG Library Rattus norvegicus cDNA clone DRA02G08 5', 
(gb|BG662749.1|), blast E-value=2e-30, identity=94.85% 
               

               
               237-505, DRAABC08 Rat DRG Library Rattus norvegicus cDNA clone DRAABC08 5', 
(gb|BG663989.1|), blast E-value=2e-30, identity=94.85% 
               

               
               237-505, DRAAEA01 Rat DRG Library Rattus norvegicus cDNA clone DRAAEA01 5', 
(gb|BG664119.1|), blast E-value=3e-23, identity=91.75% 
               

               
               237-505, AMGNNUC (gb|CB580183.1|), blast E-value=2e-30, identity=94.85%
               

               
               237-505, AGENCOURT_26730028 NIH_MGC_255 Rattus norvegicus cDNA clone 
(gb|CO400909.1|), blast E-value=2e-30, identity=94.85% 
               

               
               411-571, UMC-pd3end3-013-a07 Endometrium gilt D3 of estrous cycle pd3end Sus 
(gb|CO989232.1|), blast E-value=0.000000000002, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-624, gnl|bosTau2|chr3 (65713805-65714448)
               

               
               3-624, gnl|Hg17|chr1 (50378940-50379560)
               

               
               3-624, gnl|Mm7|chr4 (109582698-109582092)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-624, gnl|bosTau2|chr3 (65713805-65714448)
               

               
               3-624, gnl|Hg17|chr1 (50378940-50379560)
               

               
               3-624, gnl|Mm7|chr4 (109582698-109582092)

	38-157, - strand, RNAz p=0.705309
	237-571, - strand, RNAz p=0.992993

	473-575, - strand, RNAmicro p=0.998353
	480-570, + strand, RNAmicro p=0.99425

	237-505, DRA02G08 Rat DRG Library Rattus norvegicus cDNA clone DRA02G08 5', (gb\|BG662749.1\|), blast E-value=2e-30, identity=94.85%
	237-505, DRAABC08 Rat DRG Library Rattus norvegicus cDNA clone DRAABC08 5', (gb\|BG663989.1\|), blast E-value=2e-30, identity=94.85%
	237-505, DRAAEA01 Rat DRG Library Rattus norvegicus cDNA clone DRAAEA01 5', (gb\|BG664119.1\|), blast E-value=3e-23, identity=91.75%
	237-505, AMGNNUC (gb\|CB580183.1\|), blast E-value=2e-30, identity=94.85%
	237-505, AGENCOURT_26730028 NIH_MGC_255 Rattus norvegicus cDNA clone (gb\|CO400909.1\|), blast E-value=2e-30, identity=94.85%
	411-571, UMC-pd3end3-013-a07 Endometrium gilt D3 of estrous cycle pd3end Sus (gb\|CO989232.1\|), blast E-value=0.000000000002, identity=100%

	3-624, gnl\|bosTau2\|chr3 (65713805-65714448)
	3-624, gnl\|Hg17\|chr1 (50378940-50379560)
	3-624, gnl\|Mm7\|chr4 (109582698-109582092)