Non-Coding RNA Search

Ss1.1-Mixc-0042,k10.5

Sequence:


               
               TTAACCAGCTCCCCCTCGCCCCGGCCTTGCGATCTCCCCTGGGACCCCCTCCCTGCTTCA
GGAATCAGACAGGCAAGCATCGTGCCCTGTCCTCCTCCACCCCCTTCTTGGAATCCACCC
CCCGCTCCCCACTGCTGTCTCCCCTGGACTCCGGCCCCTGAATTATAAAGGCTGGAGTCC
TAGGTCTGACTAAAACATGGGAGCAGCAGAGCTTGGAGCTTGGAGCTTGAAACCTGGACC
CTCCCGCACCCGCACCCCACTTCCCAGGCACCCTGGAGCCTGCCACTCCTGGAGAGGTCT
CCAGATGACATCCCAAGGACCTACCTCTGTCCTCTGTGAGCACAAACAGAGATGCAGGGT
GCCTAGGGCCTAGAGGACCAGACGGGGGCGGAACCCAACCTGCTTGTTCCCTTGCTGTGG
CCATCGCTGCCATCTCTTCCAATGCTTGAAGGCCTCATCCCTTGCCCCCTGCCACTCCCA
TAGTGCTCTGTAAATATGATCAGGAGGAAAAGGCCTTTCAGAGTGTTTGTCGCTGTGTAC
AAAAGAATTTCCATCAATAAAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAACCAGCTCCCCCTCGCCCCGGCCTTGCGATCTCCCCTGGGACCCCCTCCCTGCTTCA
GGAATCAGACAGGCAAGCATCGTGCCCTGTCCTCCTCCACCCCCTTCTTGGAATCCACCC
CCCGCTCCCCACTGCTGTCTCCCCTGGACTCCGGCCCCTGAATTATAAAGGCTGGAGTCC
TAGGTCTGACTAAAACATGGGAGCAGCAGAGCTTGGAGCTTGGAGCTTGAAACCTGGACC
CTCCCGCACCCGCACCCCACTTCCCAGGCACCCTGGAGCCTGCCACTCCTGGAGAGGTCT
CCAGATGACATCCCAAGGACCTACCTCTGTCCTCTGTGAGCACAAACAGAGATGCAGGGT
GCCTAGGGCCTAGAGGACCAGACGGGGGCGGAACCCAACCTGCTTGTTCCCTTGCTGTGG
CCATCGCTGCCATCTCTTCCAATGCTTGAAGGCCTCATCCCTTGCCCCCTGCCACTCCCA
TAGTGCTCTGTAAATATGATCAGGAGGAAAAGGCCTTTCAGAGTGTTTGTCGCTGTGTAC
AAAAGAATTTCCATCAATAAAAGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               19-395, - strand, RNAz p=0.99968

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               19-395, - strand, RNAz p=0.99968

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               317-403, + strand, RNAmicro p=0.997549
               

               
               261-408, - strand, RNAmicro p=0.920868

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               317-403, + strand, RNAmicro p=0.997549
               

               
               261-408, - strand, RNAmicro p=0.920868

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               132-387, 289947 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF890243.1|), 
blast E-value=0, identity=93.75% 
               

               
               51-389, UI-E-EJ1-ajz-d-02-0-UI.r1 UI-E-EJ1 Homo sapiens cDNA clone 
(gb|BQ187376.1|), blast E-value=0, identity=89.47% 
               

               
               132-387, BovGen_19520 normal cattle brain Bos taurus cDNA clone 
(gb|CO891195.1|), blast E-value=0, identity=93.75% 
               

               
               132-387, BovGen_20128 normal cattle brain Bos taurus cDNA clone 
(gb|CO891803.1|), blast E-value=0, identity=93.75% 
               

               
               132-387, 1316937 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN528393.1|), 
blast E-value=0, identity=93.75% 
               

               
               132-387, 1318473 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN529791.1|), 
blast E-value=0, identity=93.75%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               132-387, 289947 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF890243.1|), 
blast E-value=0, identity=93.75% 
               

               
               51-389, UI-E-EJ1-ajz-d-02-0-UI.r1 UI-E-EJ1 Homo sapiens cDNA clone 
(gb|BQ187376.1|), blast E-value=0, identity=89.47% 
               

               
               132-387, BovGen_19520 normal cattle brain Bos taurus cDNA clone 
(gb|CO891195.1|), blast E-value=0, identity=93.75% 
               

               
               132-387, BovGen_20128 normal cattle brain Bos taurus cDNA clone 
(gb|CO891803.1|), blast E-value=0, identity=93.75% 
               

               
               132-387, 1316937 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN528393.1|), 
blast E-value=0, identity=93.75% 
               

               
               132-387, 1318473 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN529791.1|), 
blast E-value=0, identity=93.75%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               19-564, gnl|bosTau2|chrX (437911-437382)
               

               
               19-564, gnl|Hg17|chrX (53179117-53178541)
               

               
               19-564, gnl|Mm7|chrX (146952691-146953268)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-564, gnl|bosTau2|chrX (437911-437382)
               

               
               19-564, gnl|Hg17|chrX (53179117-53178541)
               

               
               19-564, gnl|Mm7|chrX (146952691-146953268)

	317-403, + strand, RNAmicro p=0.997549
	261-408, - strand, RNAmicro p=0.920868

	132-387, 289947 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb\|BF890243.1\|), blast E-value=0, identity=93.75%
	51-389, UI-E-EJ1-ajz-d-02-0-UI.r1 UI-E-EJ1 Homo sapiens cDNA clone (gb\|BQ187376.1\|), blast E-value=0, identity=89.47%
	132-387, BovGen_19520 normal cattle brain Bos taurus cDNA clone (gb\|CO891195.1\|), blast E-value=0, identity=93.75%
	132-387, BovGen_20128 normal cattle brain Bos taurus cDNA clone (gb\|CO891803.1\|), blast E-value=0, identity=93.75%
	132-387, 1316937 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN528393.1\|), blast E-value=0, identity=93.75%
	132-387, 1318473 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN529791.1\|), blast E-value=0, identity=93.75%

	19-564, gnl\|bosTau2\|chrX (437911-437382)
	19-564, gnl\|Hg17\|chrX (53179117-53178541)
	19-564, gnl\|Mm7\|chrX (146952691-146953268)