Non-Coding RNA Search

Ss1.1-Mixc-0043,o08.5

Sequence:


               
               GCCGAGGGGCGGCTCCGCGGCGCGGAGCGGCGCGCGACCCAGAAGCGTTGGAATCCTGAA
TTGAGACGGCTGCGCCTGAAGACAGCAGGAGTGGCGGGGCCGCCGCCGTCGCCAGAGAGA
TGAGCCGGGAAGCCTGAGGCCGGAGACGCCCGCCCTCGGGCCTGTCCGGCCGCCGAAGCC
TGTACCGGTTACTGGAAGATGAAAGAGACTATACAAGGGACCGGGTCTTGGAGGCCTGAG
CCTCCTGGACCCGGCATCGCCCCAGCTTATTCAAGTCCCAGGCGGGAGCGTCTTCGTTGG
CCTCCACCCCCAAAGCCCCGACTCAAATCAGGTGGAGGGTTTGGGCCAGATCCTGGGTCA
GGGACCACAGTGCCAGCCAGACGCCTCCCTGTTCCTCGGCCCTCTTTTGATGCTTCAGCT
AGTGAAGAGGAAGAAGAGGAGGAAGATGATGAGGATGAAGATGAGGAAGAGGAAGTGGCA
GCTTGGCGGCTGCCCCCCAGATGGGGTCAGCTCGGAGCCTCCCACAGGTCTCGCCCTCCC
CGCCCTGCTCATCGGAAAACCTGTTCACAGCGCCGTCGCAGAGCTATGAGAGCCTTCCGG
ATGCTGCTCTACTCTAAAAGCACCTCGCTGACATTCCACTGGAAGCTTTGGGGGCGCCAC
CGGGGCCGGCGGCGGAGCCTTGCACACCCCAAGAACCATCACAGTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGAGGGGCGGCTCCGCGGCGCGGAGCGGCGCGCGACCCAGAAGCGTTGGAATCCTGAA
TTGAGACGGCTGCGCCTGAAGACAGCAGGAGTGGCGGGGCCGCCGCCGTCGCCAGAGAGA
TGAGCCGGGAAGCCTGAGGCCGGAGACGCCCGCCCTCGGGCCTGTCCGGCCGCCGAAGCC
TGTACCGGTTACTGGAAGATGAAAGAGACTATACAAGGGACCGGGTCTTGGAGGCCTGAG
CCTCCTGGACCCGGCATCGCCCCAGCTTATTCAAGTCCCAGGCGGGAGCGTCTTCGTTGG
CCTCCACCCCCAAAGCCCCGACTCAAATCAGGTGGAGGGTTTGGGCCAGATCCTGGGTCA
GGGACCACAGTGCCAGCCAGACGCCTCCCTGTTCCTCGGCCCTCTTTTGATGCTTCAGCT
AGTGAAGAGGAAGAAGAGGAGGAAGATGATGAGGATGAAGATGAGGAAGAGGAAGTGGCA
GCTTGGCGGCTGCCCCCCAGATGGGGTCAGCTCGGAGCCTCCCACAGGTCTCGCCCTCCC
CGCCCTGCTCATCGGAAAACCTGTTCACAGCGCCGTCGCAGAGCTATGAGAGCCTTCCGG
ATGCTGCTCTACTCTAAAAGCACCTCGCTGACATTCCACTGGAAGCTTTGGGGGCGCCAC
CGGGGCCGGCGGCGGAGCCTTGCACACCCCAAGAACCATCACAGTCCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               187-545, - strand, RNAz p=0.998587
               

               
               387-546, - strand, RNAz p=0.991715

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               187-545, - strand, RNAz p=0.998587
               

               
               387-546, - strand, RNAz p=0.991715

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               192-281, + strand, RNAmicro p=0.985623
               

               
               190-347, - strand, RNAmicro p=0.914377

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               192-281, + strand, RNAmicro p=0.985623
               

               
               190-347, - strand, RNAmicro p=0.914377

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               190-419, DA285770 BRCOC2 Homo sapiens cDNA clone BRCOC2016281 5', mRNA 
(dbj|DA285770.1|), blast E-value=0, identity=93.91% 
               

               
               190-419, CR978603 RZPD no.9016 Homo sapiens cDNA clone RZPDp9016I0322 5', 
(emb|CR978603.1|), blast E-value=0, identity=93.91% 
               

               
               190-419, CR998743 RZPD no.9017 Homo sapiens cDNA clone RZPDp9017D102 5', 
(emb|CR998743.1|), blast E-value=0, identity=93.91% 
               

               
               190-419, CT002374 RZPD no.9017 Homo sapiens cDNA clone RZPDp9017A1212 5', 
(emb|CT002374.1|), blast E-value=0, identity=93.91% 
               

               
               190-419, TC114607 Human placenta, large insert, pCMV expression library Homo 
(gb|DR004501.1|), blast E-value=0, identity=93.91% 
               

               
               193-545, LB02525.CR_A06 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV874664.1|), 
blast E-value=4e-16, identity=91.55%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               190-419, DA285770 BRCOC2 Homo sapiens cDNA clone BRCOC2016281 5', mRNA 
(dbj|DA285770.1|), blast E-value=0, identity=93.91% 
               

               
               190-419, CR978603 RZPD no.9016 Homo sapiens cDNA clone RZPDp9016I0322 5', 
(emb|CR978603.1|), blast E-value=0, identity=93.91% 
               

               
               190-419, CR998743 RZPD no.9017 Homo sapiens cDNA clone RZPDp9017D102 5', 
(emb|CR998743.1|), blast E-value=0, identity=93.91% 
               

               
               190-419, CT002374 RZPD no.9017 Homo sapiens cDNA clone RZPDp9017A1212 5', 
(emb|CT002374.1|), blast E-value=0, identity=93.91% 
               

               
               190-419, TC114607 Human placenta, large insert, pCMV expression library Homo 
(gb|DR004501.1|), blast E-value=0, identity=93.91% 
               

               
               193-545, LB02525.CR_A06 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV874664.1|), 
blast E-value=4e-16, identity=91.55%

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               5-172, gnl|bosTau2|chr19 (13264112-13264278)
               

               
               5-172, gnl|Hg17|chr17 (7406115-7406289)
               

               
               5-172, gnl|Mm7|chr11 (69763402-69763252)
               


               
               187-700, gnl|bosTau2|chr19 (13265434-13265947)
               

               
               187-700, gnl|Hg17|chr17 (7407106-7407619)
               

               
               187-700, gnl|Mm7|chr11 (69762425-69761930)
               


               
               307-698, gnl|bosTau2|chr18 (55311499-55311109)
               

               
               307-698, gnl|Hg17|chr17 (7407227-7407617)
               

               
               307-698, gnl|Mm7|chr11 (69762310-69761932)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-172, gnl|bosTau2|chr19 (13264112-13264278)
               

               
               5-172, gnl|Hg17|chr17 (7406115-7406289)
               

               
               5-172, gnl|Mm7|chr11 (69763402-69763252)
               


               
               187-700, gnl|bosTau2|chr19 (13265434-13265947)
               

               
               187-700, gnl|Hg17|chr17 (7407106-7407619)
               

               
               187-700, gnl|Mm7|chr11 (69762425-69761930)
               


               
               307-698, gnl|bosTau2|chr18 (55311499-55311109)
               

               
               307-698, gnl|Hg17|chr17 (7407227-7407617)
               

               
               307-698, gnl|Mm7|chr11 (69762310-69761932)

	187-545, - strand, RNAz p=0.998587
	387-546, - strand, RNAz p=0.991715

	192-281, + strand, RNAmicro p=0.985623
	190-347, - strand, RNAmicro p=0.914377

	190-419, DA285770 BRCOC2 Homo sapiens cDNA clone BRCOC2016281 5', mRNA (dbj\|DA285770.1\|), blast E-value=0, identity=93.91%
	190-419, CR978603 RZPD no.9016 Homo sapiens cDNA clone RZPDp9016I0322 5', (emb\|CR978603.1\|), blast E-value=0, identity=93.91%
	190-419, CR998743 RZPD no.9017 Homo sapiens cDNA clone RZPDp9017D102 5', (emb\|CR998743.1\|), blast E-value=0, identity=93.91%
	190-419, CT002374 RZPD no.9017 Homo sapiens cDNA clone RZPDp9017A1212 5', (emb\|CT002374.1\|), blast E-value=0, identity=93.91%
	190-419, TC114607 Human placenta, large insert, pCMV expression library Homo (gb\|DR004501.1\|), blast E-value=0, identity=93.91%
	193-545, LB02525.CR_A06 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb\|DV874664.1\|), blast E-value=4e-16, identity=91.55%

	5-172, gnl\|bosTau2\|chr19 (13264112-13264278)
	5-172, gnl\|Hg17\|chr17 (7406115-7406289)
	5-172, gnl\|Mm7\|chr11 (69763402-69763252)

	187-700, gnl\|bosTau2\|chr19 (13265434-13265947)
	187-700, gnl\|Hg17\|chr17 (7407106-7407619)
	187-700, gnl\|Mm7\|chr11 (69762425-69761930)

	307-698, gnl\|bosTau2\|chr18 (55311499-55311109)
	307-698, gnl\|Hg17\|chr17 (7407227-7407617)
	307-698, gnl\|Mm7\|chr11 (69762310-69761932)