Ss1.1-Mixc-0044,k07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGAGAGACCCGGGTCTCTTGCAGCTGGATTTTTCTCTTCCCTCTTCCTACCCTTTTCCT TTCCCTGAGGTTGGCATCCCGAGGGTTGAGTTCGGGTGGCGGCGCCGGGCGCAGCGCAGG GGTCACGGCGACGGCGGCAGCGGCTGACGGCTGGAAGGGCAGGCTTCCTTCGCCGCTTGT CCTCCTTCCCCGGTCCGCTCGGTGTCAGGCGCGGCGGCTGCGGCGGCGCGGCGGGCGGAC TTCATCCCTTCTCCAGCTCCCTCCTGCACCGGAGCGGGCACTCTTTCTTTCGATATCCCC TAACCCCTCACCTCGGGGACTGGGCGCCTCCTCTGGCACAGCTCGGGGAGCGGGGGCCGG TCTCCTGCTCCACTGTCGCGCCTCCATGTCGGATAACCAGAGCTGGAACTCCTCGGGCTC GGAGGAGGATCCGGAGACGGAGTCCGGGCCGCCTGTGGAGCGCTGCGGGGTCCTTAGCAA GTGGACAAACTACATTCATGGGTGGCAGGATCGTTGGGTAGTTTTGAAAATAATACTCTG AGTTACTACAAATCTGAAGATGAGACAGAATATGGCTGCAGAGGATCCATCTGTCTTAGT AAGGCTGTCATCACGCCTCATGATTTTGATGAATGTCGATTTGATATTAGTGTAAATGAT AGCGTTTGGTATCTTCGTGCTCAGGATCCAGATCACAGACAGCAGTGGATAGATGCCATT GAACAGCACAAGACTGAATCTGGATATGGATCTGAATCAAGCTTGCGTCGACATGGCTCA ATGGTGTCACTGGTGTCTGGAGCAAGTGGCTATTCTGCAACATCCACCTCTTCATTCAAG AAAGGCCACAGTTTACGTGAGAAATTGGCTGAAATGGAAACCTTTAGAGATATCCTATGT AGACAAGTTGATACTCTACAGAAGTACTTTGATGCCTGTGCTGATGCTGTCTCCAAGGAT GAACTTCAAAGGGATAAAGTGGTAGAAGATGATGAAGATGACTTTCCTACAACACGTTCT GATGGAGACTTCTTGCATAACACCAATGGCAGTAAGGAAAAGGTATTTCCACATGTAACA CCAAAAGGAATTAATGGTATAGACTTTAAAGGGGAGGCGATAACTTTTAAAGCAACTACT GCTGGTATCCTTGCTACACTCTCTCATTGTATTGAACTAATGGTAAAACGTGAGGACAGC TGGCAAAAGAGATGGGATAAGGAAAGTGAGAAGAGAAGAAGAGTAGAAGATGAGTACAAA ATGCCACGGCAGAGCTTAAGAAAAATCCCACTTTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGAGAGACCCGGGTCTCTTGCAGCTGGATTTTTCTCTTCCCTCTTCCTACCCTTTTCCT TTCCCTGAGGTTGGCATCCCGAGGGTTGAGTTCGGGTGGCGGCGCCGGGCGCAGCGCAGG GGTCACGGCGACGGCGGCAGCGGCTGACGGCTGGAAGGGCAGGCTTCCTTCGCCGCTTGT CCTCCTTCCCCGGTCCGCTCGGTGTCAGGCGCGGCGGCTGCGGCGGCGCGGCGGGCGGAC TTCATCCCTTCTCCAGCTCCCTCCTGCACCGGAGCGGGCACTCTTTCTTTCGATATCCCC TAACCCCTCACCTCGGGGACTGGGCGCCTCCTCTGGCACAGCTCGGGGAGCGGGGGCCGG TCTCCTGCTCCACTGTCGCGCCTCCATGTCGGATAACCAGAGCTGGAACTCCTCGGGCTC GGAGGAGGATCCGGAGACGGAGTCCGGGCCGCCTGTGGAGCGCTGCGGGGTCCTTAGCAA GTGGACAAACTACATTCATGGGTGGCAGGATCGTTGGGTAGTTTTGAAAATAATACTCTG AGTTACTACAAATCTGAAGATGAGACAGAATATGGCTGCAGAGGATCCATCTGTCTTAGT AAGGCTGTCATCACGCCTCATGATTTTGATGAATGTCGATTTGATATTAGTGTAAATGAT AGCGTTTGGTATCTTCGTGCTCAGGATCCAGATCACAGACAGCAGTGGATAGATGCCATT GAACAGCACAAGACTGAATCTGGATATGGATCTGAATCAAGCTTGCGTCGACATGGCTCA ATGGTGTCACTGGTGTCTGGAGCAAGTGGCTATTCTGCAACATCCACCTCTTCATTCAAG AAAGGCCACAGTTTACGTGAGAAATTGGCTGAAATGGAAACCTTTAGAGATATCCTATGT AGACAAGTTGATACTCTACAGAAGTACTTTGATGCCTGTGCTGATGCTGTCTCCAAGGAT GAACTTCAAAGGGATAAAGTGGTAGAAGATGATGAAGATGACTTTCCTACAACACGTTCT GATGGAGACTTCTTGCATAACACCAATGGCAGTAAGGAAAAGGTATTTCCACATGTAACA CCAAAAGGAATTAATGGTATAGACTTTAAAGGGGAGGCGATAACTTTTAAAGCAACTACT GCTGGTATCCTTGCTACACTCTCTCATTGTATTGAACTAATGGTAAAACGTGAGGACAGC TGGCAAAAGAGATGGGATAAGGAAAGTGAGAAGAGAAGAAGAGTAGAAGATGAGTACAAA ATGCCACGGCAGAGCTTAAGAAAAATCCCACTTTGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 245-364, - strand, RNAz p=0.953666 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 245-364, - strand, RNAz p=0.953666 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 86-481, gnl|bosTau2|chr10 (1707186-1707587) | |
| 86-481, gnl|Hg17|chr5 (74843114-74842693) | |
| 86-481, gnl|Mm7|chr13 (93612196-93612616) | |
| 615-732, gnl|bosTau2|chr10 (1748067-1748184) | |
| 615-732, gnl|canFam2|chr3 (33778566-33778408) | |
| 615-732, gnl|danRer3|chr5 (57282590-57282444) | |
| 615-732, gnl|dasNov1|scaffold_152244 (299-457) | |
| 615-732, gnl|echTel1|scaffold_292335 (88989-88837) | |
| 615-732, gnl|fr1|chrUn (212662205-212662050) | |
| 615-732, gnl|galGal2|chrZ (10170048-10170205) | |
| 615-732, gnl|hg17|chr5 (74790641-74790798) | |
| 615-732, gnl|Hg17|chr5 (74790763-74790646) | |
| 615-732, gnl|mm7|chr13 (93641391-93641236) | |
| 615-732, gnl|Mm7|chr13 (93641267-93641384) | |
| 615-732, gnl|monDom2|scaffold_60 (9837085-9837243) | |
| 615-732, gnl|oryCun1|scaffold_194109 (10989-11144) | |
| 615-732, gnl|panTro1|chr4 (40633813-40633656) | |
| 615-732, gnl|rheMac2|chr6 (71659535-71659692) | |
| 615-732, gnl|rn3|chr2 (26966944-26966788) | |
| 615-732, gnl|tetNig1|chrUn_random (1526519-1526663) | |
| 615-732, gnl|xenTro1|scaffold_120 (2042890-2043039) | |
| 839-979, gnl|bosTau2|chr10 (1769728-1769868) | |
| 839-979, gnl|Hg17|chr5 (74757082-74756942) | |
| 839-979, gnl|Mm7|chr13 (93668745-93668885) | |
| 1063-1226, gnl|bosTau2|chr10 (1781507-1781670) | |
| 1063-1226, gnl|Hg17|chr5 (74748615-74748452) | |
| 1063-1226, gnl|Mm7|chr13 (93679130-93679293) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 86-481, gnl|bosTau2|chr10 (1707186-1707587) | |
| 86-481, gnl|Hg17|chr5 (74843114-74842693) | |
| 86-481, gnl|Mm7|chr13 (93612196-93612616) | |
| 615-732, gnl|bosTau2|chr10 (1748067-1748184) | |
| 615-732, gnl|canFam2|chr3 (33778566-33778408) | |
| 615-732, gnl|danRer3|chr5 (57282590-57282444) | |
| 615-732, gnl|dasNov1|scaffold_152244 (299-457) | |
| 615-732, gnl|echTel1|scaffold_292335 (88989-88837) | |
| 615-732, gnl|fr1|chrUn (212662205-212662050) | |
| 615-732, gnl|galGal2|chrZ (10170048-10170205) | |
| 615-732, gnl|hg17|chr5 (74790641-74790798) | |
| 615-732, gnl|Hg17|chr5 (74790763-74790646) | |
| 615-732, gnl|mm7|chr13 (93641391-93641236) | |
| 615-732, gnl|Mm7|chr13 (93641267-93641384) | |
| 615-732, gnl|monDom2|scaffold_60 (9837085-9837243) | |
| 615-732, gnl|oryCun1|scaffold_194109 (10989-11144) | |
| 615-732, gnl|panTro1|chr4 (40633813-40633656) | |
| 615-732, gnl|rheMac2|chr6 (71659535-71659692) | |
| 615-732, gnl|rn3|chr2 (26966944-26966788) | |
| 615-732, gnl|tetNig1|chrUn_random (1526519-1526663) | |
| 615-732, gnl|xenTro1|scaffold_120 (2042890-2043039) | |
| 839-979, gnl|bosTau2|chr10 (1769728-1769868) | |
| 839-979, gnl|Hg17|chr5 (74757082-74756942) | |
| 839-979, gnl|Mm7|chr13 (93668745-93668885) | |
| 1063-1226, gnl|bosTau2|chr10 (1781507-1781670) | |
| 1063-1226, gnl|Hg17|chr5 (74748615-74748452) | |
| 1063-1226, gnl|Mm7|chr13 (93679130-93679293) |