Non-Coding RNA Search

Ss1.1-Mixg-0004b09.5

Sequence:


               
               CATGGTTCAAGGTAAAGCACAAGGCTGGGAGTGGCAAGGGTACTGCAATCTTCAGTAAAT
CATTAAGTGGGTGCATGATATTACCCTCTGGGAAGATGCCAAGGGTGGGAGCTGTCAAGG
TGAGCAAGACAAAAGGCATGGAAGTAAGGGGTCAAAGGTCTTGCCAAAATGAGTGACCAT
GGGCTGCAGACAAGAGACATCAGAAGGGAGCTGATAGCCTAAAAGAATAGGTAGATTGAA
GGTCTGGAGATTACATGGGTGGGAGGTGTCTATCAGGAGGGTACATTCAAAATCGGAAAG
CCTGGAGTCTGCGTTCCTGGAAGCAAAGTAGCCCACGTGCCAGAACAGTCCCTGAAGCAA
AAGAGGCAGAGGAGCTCTGAGGCCACTATGGGAGAATAAGGTGAAGTTCGTCAGGTGGTG
GTGGTGGGTGAAGGCAGAAGATGAATAAACCAGAGGCTGCAGCTACTAGTGAGAGTGGAG
AGAAAAGCATGAAGGATGCAGTCAAGGGCCCAGATATCTGGCTCAGTCCTAGGGCAAGTC
CTCTGCCTCTCTTGGGACTCCCTTTCTGCACCATGAGATCAGGAGGCTGGACTAATTATC
ACTTAGATCATATAACAGTCCTAAAATTATATCAGCTTTCTCATATGGAAATGATGGCTG
TGAAGCTGAGAAGGTGTTCACGAACTTTGTTGGAGAACTGTCTTTACTGTACTTCCTATC
AGAATTCACATATATTACCTTAGCAACTCTATATTATATAGGACTTCAAAATTTACAAAG
TTCTCTTAGATGTATTTTTTAACCTCTATACATATGTGATCCTAACCACCTCTCTGTGAT
TTTACAATCCCTATTTCAGAGGTGAAGAAACTGAGATTCCACAAGGCTGAAGCTACTGCA
GCTTTGAACTGGTAAAGTCTTTTTCTCCTAATAAAAAGATCTTACTTGATATGCTTTATC
AGGATAACCTATAACTTAATAGCATTTAAAATTCATTCCCTCAGCAAGTAACAAGGGCCC
CACTAATCGCACTAAAGCTAAAAACGTCACTCAATCCAGGCACCCAACAGATTACCTGAT
CATTGAAATGAACCAAGAGGACGGCCTGAACTTTATGAAATTTTTATAATGTCGAAAGAA
AGCTTTGTAAATGAAAACAAATCAAAACAAGTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGGTTCAAGGTAAAGCACAAGGCTGGGAGTGGCAAGGGTACTGCAATCTTCAGTAAAT
CATTAAGTGGGTGCATGATATTACCCTCTGGGAAGATGCCAAGGGTGGGAGCTGTCAAGG
TGAGCAAGACAAAAGGCATGGAAGTAAGGGGTCAAAGGTCTTGCCAAAATGAGTGACCAT
GGGCTGCAGACAAGAGACATCAGAAGGGAGCTGATAGCCTAAAAGAATAGGTAGATTGAA
GGTCTGGAGATTACATGGGTGGGAGGTGTCTATCAGGAGGGTACATTCAAAATCGGAAAG
CCTGGAGTCTGCGTTCCTGGAAGCAAAGTAGCCCACGTGCCAGAACAGTCCCTGAAGCAA
AAGAGGCAGAGGAGCTCTGAGGCCACTATGGGAGAATAAGGTGAAGTTCGTCAGGTGGTG
GTGGTGGGTGAAGGCAGAAGATGAATAAACCAGAGGCTGCAGCTACTAGTGAGAGTGGAG
AGAAAAGCATGAAGGATGCAGTCAAGGGCCCAGATATCTGGCTCAGTCCTAGGGCAAGTC
CTCTGCCTCTCTTGGGACTCCCTTTCTGCACCATGAGATCAGGAGGCTGGACTAATTATC
ACTTAGATCATATAACAGTCCTAAAATTATATCAGCTTTCTCATATGGAAATGATGGCTG
TGAAGCTGAGAAGGTGTTCACGAACTTTGTTGGAGAACTGTCTTTACTGTACTTCCTATC
AGAATTCACATATATTACCTTAGCAACTCTATATTATATAGGACTTCAAAATTTACAAAG
TTCTCTTAGATGTATTTTTTAACCTCTATACATATGTGATCCTAACCACCTCTCTGTGAT
TTTACAATCCCTATTTCAGAGGTGAAGAAACTGAGATTCCACAAGGCTGAAGCTACTGCA
GCTTTGAACTGGTAAAGTCTTTTTCTCCTAATAAAAAGATCTTACTTGATATGCTTTATC
AGGATAACCTATAACTTAATAGCATTTAAAATTCATTCCCTCAGCAAGTAACAAGGGCCC
CACTAATCGCACTAAAGCTAAAAACGTCACTCAATCCAGGCACCCAACAGATTACCTGAT
CATTGAAATGAACCAAGAGGACGGCCTGAACTTTATGAAATTTTTATAATGTCGAAAGAA
AGCTTTGTAAATGAAAACAAATCAAAACAAGTTTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               91-210, + strand, RNAz p=0.96942

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               91-210, + strand, RNAz p=0.96942

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               11-1172, gnl|bosTau2|chr3 (39009415-39008250)
               

               
               11-1172, gnl|Hg17|chr1 (100558396-100556851)
               

               
               11-1172, gnl|Mm7|chr3 (116174848-116176002)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-1172, gnl|bosTau2|chr3 (39009415-39008250)
               

               
               11-1172, gnl|Hg17|chr1 (100558396-100556851)
               

               
               11-1172, gnl|Mm7|chr3 (116174848-116176002)

	11-1172, gnl\|bosTau2\|chr3 (39009415-39008250)
	11-1172, gnl\|Hg17\|chr1 (100558396-100556851)
	11-1172, gnl\|Mm7\|chr3 (116174848-116176002)