Non-Coding RNA Search

Ss1.1-Mixg-0004d10.3

Sequence:


               
               GCGGCCGCCACCTATGCAGCTGCAGCGACATCAGCAGCCCAGGCAGCTAAGGCTGCTGCC
AGGCTGATCAGGGACACCCCTACCACCAAATTGCCCACCATAGCAACATCCACGGCCACA
TCCGGGCCCTCAGGGGTCCCGGGAGACATCCAGGGCACAGGGTCCCCCCGCGGGGCCTCC
AGCTCTGTGGCCTTCACCGATGACGGTGAGCCGGAAGACCTGCGAGAGATGGACTATGAG
GAAATCCTCTCCCCTTCGTTGTCTCCACCCGGCATGGCCCTGTCCCAGGCCATGCTGGCT
GCCAAACAGGCCACAACCCCCGAAGACAAGAAGAAGGCCGTCAGGTCCTCCATGAACCAC
ATGGCCTGGATGCCCGTTAGACACGACTCCCTGAAAGGAGAGCTTGCCCAGCTGTCAGCC
AGCCTAGAGCAGCGCATGACTTACCTAGCTAATATGGGAGCCTCTTCCAAGCTTGGGACA
ACAGTAGACGTACTGCAGGAGAAGATTGGCATCCTCCAGAAATCCAGGATGAGGGAGGAA
GAACTTGAGAGGATTTGGGGCCACCAAATCGAAATGATCAAGGACCACCACGTGGTGCTG
GACAGGGCAGTGGACAAGCTCCAGACCCACCTGGATGAGTTAAAGGTCGTCCATTCTCAA
ATTAAAAACCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCCACCTATGCAGCTGCAGCGACATCAGCAGCCCAGGCAGCTAAGGCTGCTGCC
AGGCTGATCAGGGACACCCCTACCACCAAATTGCCCACCATAGCAACATCCACGGCCACA
TCCGGGCCCTCAGGGGTCCCGGGAGACATCCAGGGCACAGGGTCCCCCCGCGGGGCCTCC
AGCTCTGTGGCCTTCACCGATGACGGTGAGCCGGAAGACCTGCGAGAGATGGACTATGAG
GAAATCCTCTCCCCTTCGTTGTCTCCACCCGGCATGGCCCTGTCCCAGGCCATGCTGGCT
GCCAAACAGGCCACAACCCCCGAAGACAAGAAGAAGGCCGTCAGGTCCTCCATGAACCAC
ATGGCCTGGATGCCCGTTAGACACGACTCCCTGAAAGGAGAGCTTGCCCAGCTGTCAGCC
AGCCTAGAGCAGCGCATGACTTACCTAGCTAATATGGGAGCCTCTTCCAAGCTTGGGACA
ACAGTAGACGTACTGCAGGAGAAGATTGGCATCCTCCAGAAATCCAGGATGAGGGAGGAA
GAACTTGAGAGGATTTGGGGCCACCAAATCGAAATGATCAAGGACCACCACGTGGTGCTG
GACAGGGCAGTGGACAAGCTCCAGACCCACCTGGATGAGTTAAAGGTCGTCCATTCTCAA
ATTAAAAACCTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               25-220, - strand, RNAz p=0.964944

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               25-220, - strand, RNAz p=0.964944

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               25-451, gnl|bosTau2|chr25 (4537791-4538211)
               

               
               25-451, gnl|Hg17|chr16 (4566224-4566640)
               

               
               25-451, gnl|Mm7|chr16 (4524346-4524757)
               


               
               534-648, gnl|bosTau2|chr25 (4542580-4542694)
               

               
               534-648, gnl|Hg17|chr16 (4570016-4570130)
               

               
               534-648, gnl|Mm7|chr16 (4525666-4525780)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-451, gnl|bosTau2|chr25 (4537791-4538211)
               

               
               25-451, gnl|Hg17|chr16 (4566224-4566640)
               

               
               25-451, gnl|Mm7|chr16 (4524346-4524757)
               


               
               534-648, gnl|bosTau2|chr25 (4542580-4542694)
               

               
               534-648, gnl|Hg17|chr16 (4570016-4570130)
               

               
               534-648, gnl|Mm7|chr16 (4525666-4525780)

	25-451, gnl\|bosTau2\|chr25 (4537791-4538211)
	25-451, gnl\|Hg17\|chr16 (4566224-4566640)
	25-451, gnl\|Mm7\|chr16 (4524346-4524757)

	534-648, gnl\|bosTau2\|chr25 (4542580-4542694)
	534-648, gnl\|Hg17\|chr16 (4570016-4570130)
	534-648, gnl\|Mm7\|chr16 (4525666-4525780)