Non-Coding RNA Search

Ss1.1-Mixg-0004e08.5

Sequence:


               
               CTGGACTCCAGCAGCCAGCCGCTGTGCCAGCCCGAGAAGCACGGGCCGCGGGCCGCGGCC
CGGGAGGTGCACTACGTGGCGGCGGGGCCGGGTGAGGCGTGCGGCTGGCGGGCCTTCGCG
CCCGCGTGCCTGCAGGTCTTCAACACGCCCTGCGGCTTCCTGCTGTTCCTGTGCGCGGCC
TCCTTCCTGCAGGGCATGACGGTGAACGGCTTCATCAACTCGGTCATCACGTCCATCGAG
CGGCGCTTCGACCTGCACAGCTACCAGAGCGGCCTCACCGCCAGCTCCTACGACGTGGCC
GCCTGCCTCTGCATCACCTTCGTCAGCTACTTCGGCGGCCACGGCCACAAGCCCCGCTGG
CTGGGCTGGGGCGTGCTGGTCATGGGCGCCGGCTCGCTGGTGTTCGCGCTGCCCCACTTC
ACGACCGGCCCCTACGAGGTGCAGGGGGACCAGGTCGTGGGCACCTGCCGCGCCAACCAG
AGCGCGCCGTGCGGGGGCCGCGCGTCCAGCCTGTCCAGCTACCGGCTGGTCTTCATGCTG
GGCCAGTTCCTGCACGGCGTGGGGGCCACGCCGCTCTACACGCTGGGTGTCACCTACCTG
GACGAGAACGTCAAGTCCAGCTCTTCGCCAGTCTACCTCGCCACCTTCTACACCGCGGCC
ATCCTCGGCCCCGCAGCTGGCTACCTGGTCGGAGGTGCCCTGCTGAATATTTACACCGAA
ATAGGCACAAGGACAGAGCTGACCACGGAGAGCCCGCATTGGGTTGGCGCCTGGTGGGTC
GGCTTCCTGGGCGCCGGAGCCGCGGCTTTCCTCATCACAGTCCCCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGACTCCAGCAGCCAGCCGCTGTGCCAGCCCGAGAAGCACGGGCCGCGGGCCGCGGCC
CGGGAGGTGCACTACGTGGCGGCGGGGCCGGGTGAGGCGTGCGGCTGGCGGGCCTTCGCG
CCCGCGTGCCTGCAGGTCTTCAACACGCCCTGCGGCTTCCTGCTGTTCCTGTGCGCGGCC
TCCTTCCTGCAGGGCATGACGGTGAACGGCTTCATCAACTCGGTCATCACGTCCATCGAG
CGGCGCTTCGACCTGCACAGCTACCAGAGCGGCCTCACCGCCAGCTCCTACGACGTGGCC
GCCTGCCTCTGCATCACCTTCGTCAGCTACTTCGGCGGCCACGGCCACAAGCCCCGCTGG
CTGGGCTGGGGCGTGCTGGTCATGGGCGCCGGCTCGCTGGTGTTCGCGCTGCCCCACTTC
ACGACCGGCCCCTACGAGGTGCAGGGGGACCAGGTCGTGGGCACCTGCCGCGCCAACCAG
AGCGCGCCGTGCGGGGGCCGCGCGTCCAGCCTGTCCAGCTACCGGCTGGTCTTCATGCTG
GGCCAGTTCCTGCACGGCGTGGGGGCCACGCCGCTCTACACGCTGGGTGTCACCTACCTG
GACGAGAACGTCAAGTCCAGCTCTTCGCCAGTCTACCTCGCCACCTTCTACACCGCGGCC
ATCCTCGGCCCCGCAGCTGGCTACCTGGTCGGAGGTGCCCTGCTGAATATTTACACCGAA
ATAGGCACAAGGACAGAGCTGACCACGGAGAGCCCGCATTGGGTTGGCGCCTGGTGGGTC
GGCTTCCTGGGCGCCGGAGCCGCGGCTTTCCTCATCACAGTCCCCAGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               115-234, - strand, RNAz p=0.614091

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               115-234, - strand, RNAz p=0.614091

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               116-241, + strand, RNAmicro p=0.997349

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               116-241, + strand, RNAmicro p=0.997349

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               13-636, gnl|bosTau2|chr13 (35811014-35810391)
               

               
               13-636, gnl|Hg17|chr20 (60758369-60759043)
               

               
               13-636, gnl|Mm7|chr2 (180965099-180965737)
               


               
               640-741, gnl|bosTau2|chr13 (35809452-35809349)
               

               
               640-741, gnl|Hg17|chr20 (60760473-60760576)
               

               
               640-741, gnl|Mm7|chr2 (180966509-180966612)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-636, gnl|bosTau2|chr13 (35811014-35810391)
               

               
               13-636, gnl|Hg17|chr20 (60758369-60759043)
               

               
               13-636, gnl|Mm7|chr2 (180965099-180965737)
               


               
               640-741, gnl|bosTau2|chr13 (35809452-35809349)
               

               
               640-741, gnl|Hg17|chr20 (60760473-60760576)
               

               
               640-741, gnl|Mm7|chr2 (180966509-180966612)

	13-636, gnl\|bosTau2\|chr13 (35811014-35810391)
	13-636, gnl\|Hg17\|chr20 (60758369-60759043)
	13-636, gnl\|Mm7\|chr2 (180965099-180965737)

	640-741, gnl\|bosTau2\|chr13 (35809452-35809349)
	640-741, gnl\|Hg17\|chr20 (60760473-60760576)
	640-741, gnl\|Mm7\|chr2 (180966509-180966612)