Non-Coding RNA Search

Ss1.1-Mixg-0005h12.5

Sequence:


               
               TAAAAAAGTTTAAAATCATTTTGATATTTAGCTTGTCCATCTGCCAGAGCTTTGTCCTAA
AACCGAGTCAAAGCAGGATAAGTGTGGTCACCTGTGGCATGGGTACATCAGACCTGCCAC
GTGGACTGAAGCTACAATGGGAAACCTATAGGAGAAGCCAGGGCTTGTTAGTGTTTTGGG
CTTCCTGATGCCCCCCACCCAAAGTAGAAAGTCTGTCAGCTGTGACAGTGTCAGTGAAAA
ATAGAACAAGTTTCCACTGCCAACTCGGGCCCTCACCCTACTACCTCCTCCAAAACTGAT
GGGGACTGGTCCTGGGAACCCCGGGCAGGAGCTGGTGGCATCCGTGAACAAGAACTACAT
CTGTAAACAATAGGAGACAGTCAAGTGAGAATGAAACTTATAGGAGGCCCTTTAACAGGC
CTAATAGAAGGGTCACATCCAAACTGGAATCAACAGTTAACAGTGTCCCTTAAATCTCTC
TCTGGAAGGAAGGAAAGAAAATTACATTCACAAGTTCATGTCTCTGCTTGCTTATGTTCC
TCTGGGGCATCTGGGATTCCTCCCAGCCTGTCAGAGAGGTGTGTACTGATTGTCTATGGC
CCGCAGGTGGCTCCGGGAGGAGGAGTCCATTTCATAGTCTGAGTCCCGGGCTCGACTGGC
AGGCTCAAGCTCCAGGTGCCTCAGGCTGCTTGGCCAGCTCCTCTAGCGAAAGCACCACCT
GGAAGATCTGCTCCTGGGGGAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAAAAGTTTAAAATCATTTTGATATTTAGCTTGTCCATCTGCCAGAGCTTTGTCCTAA
AACCGAGTCAAAGCAGGATAAGTGTGGTCACCTGTGGCATGGGTACATCAGACCTGCCAC
GTGGACTGAAGCTACAATGGGAAACCTATAGGAGAAGCCAGGGCTTGTTAGTGTTTTGGG
CTTCCTGATGCCCCCCACCCAAAGTAGAAAGTCTGTCAGCTGTGACAGTGTCAGTGAAAA
ATAGAACAAGTTTCCACTGCCAACTCGGGCCCTCACCCTACTACCTCCTCCAAAACTGAT
GGGGACTGGTCCTGGGAACCCCGGGCAGGAGCTGGTGGCATCCGTGAACAAGAACTACAT
CTGTAAACAATAGGAGACAGTCAAGTGAGAATGAAACTTATAGGAGGCCCTTTAACAGGC
CTAATAGAAGGGTCACATCCAAACTGGAATCAACAGTTAACAGTGTCCCTTAAATCTCTC
TCTGGAAGGAAGGAAAGAAAATTACATTCACAAGTTCATGTCTCTGCTTGCTTATGTTCC
TCTGGGGCATCTGGGATTCCTCCCAGCCTGTCAGAGAGGTGTGTACTGATTGTCTATGGC
CCGCAGGTGGCTCCGGGAGGAGGAGTCCATTTCATAGTCTGAGTCCCGGGCTCGACTGGC
AGGCTCAAGCTCCAGGTGCCTCAGGCTGCTTGGCCAGCTCCTCTAGCGAAAGCACCACCT
GGAAGATCTGCTCCTGGGGGAGAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               378-489, + strand, RNAz p=0.994694

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               378-489, + strand, RNAz p=0.994694

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-744, gnl|bosTau2|chr17 (29391606-29392331)
               

               
               1-744, gnl|Hg17|chr12 (110349400-110348655)
               

               
               1-744, gnl|Mm7|chr5 (121051550-121052231)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-744, gnl|bosTau2|chr17 (29391606-29392331)
               

               
               1-744, gnl|Hg17|chr12 (110349400-110348655)
               

               
               1-744, gnl|Mm7|chr5 (121051550-121052231)

	1-744, gnl\|bosTau2\|chr17 (29391606-29392331)
	1-744, gnl\|Hg17\|chr12 (110349400-110348655)
	1-744, gnl\|Mm7\|chr5 (121051550-121052231)