Non-Coding RNA Search

Ss1.1-Mixg-0006e11.3

Sequence:


               
               TGGCGGCGGCGGTGGCGGCGGCTGCTTCCCGATTCTGGCTGTGGGCCGCCCTGCTTATCC
CTGCGGCCGCGGTCTACGAAGACCAAGTGGGCAAGTTTGACTGGAGACAGCAGTATGTTG
GGAAGCTCAAGTTTGCCTCCTTGGAATTTTCCCCTGGATCCAAGAAGTTAGTTGTGGCCA
CAGAGAAGAATGTGATTGCAGCACTGAATTCTCGGACAGGGGAGATCTTGTGGCGCCATG
TGGACAAGGGCACGGCGGAAGGGGCAGTGGACGCCATGCTGCTCTACGGACAGGATGCAA
TCACTGTGTCCAATGGAGGCCGGATCATGCGCTCCTGGGAGACTAACATCGGGGGACTGA
ACTGGGAGATGACCTTGGACAGCGGCAGTTTCCAGGCGCTTGGGCTGGTAGGCCTCCAGG
AGTCGGTGAGGTACGTTGCGGTCCTGAAGAAAACCACTCTTGCCCTCCATCACCTCTCCA
GTGGGCACCTCAAGTGGGCAGAACATCTCCCGGAAAGGTAAGGCCACCCTCCCACCAGGT
GACCGCCACCTCCTCCTGTTCTCTGCGAGCCTTTCTCTCCTCGAGGGTTGAAGCGTTTGC
TTTGATGCAGGCTTACTTTAGCCTGAGTCAGTGATCACTAGCTCACTAGATCTAGGCCTG
AACTCCAGTGGCTGCCTCTAGAGTTTCCTTCGCAGCGAGGAGAAAACTCCATCTGGACAT
GAGAGCCAGTCAAGCAAGGAGAGTGGCTCACTCACTCACTCGCTTTGGCAGGGACTCCAA
ACTCAGATTCTTGTGGGGCCAAGTGCAGAGCACCCAAGAGCAGCAAAGCAGGCCCAGAGG
GGATTGTTGGGAGCTGCAGTGTGTCTAGCCTACCTCAAGGGGGCAGCCTTACCCAGCCAA
TTGGTGTCCTATAGGAACGTAGGTTGGCCTGGTGTTACCACGCTTTGTACTTTAAAGAAA
AGCTTGGAATCTTATTTTTACATGTAAAATCTCAGTTCTAAATGTTGACAGCGAATTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCGGCGGCGGTGGCGGCGGCTGCTTCCCGATTCTGGCTGTGGGCCGCCCTGCTTATCC
CTGCGGCCGCGGTCTACGAAGACCAAGTGGGCAAGTTTGACTGGAGACAGCAGTATGTTG
GGAAGCTCAAGTTTGCCTCCTTGGAATTTTCCCCTGGATCCAAGAAGTTAGTTGTGGCCA
CAGAGAAGAATGTGATTGCAGCACTGAATTCTCGGACAGGGGAGATCTTGTGGCGCCATG
TGGACAAGGGCACGGCGGAAGGGGCAGTGGACGCCATGCTGCTCTACGGACAGGATGCAA
TCACTGTGTCCAATGGAGGCCGGATCATGCGCTCCTGGGAGACTAACATCGGGGGACTGA
ACTGGGAGATGACCTTGGACAGCGGCAGTTTCCAGGCGCTTGGGCTGGTAGGCCTCCAGG
AGTCGGTGAGGTACGTTGCGGTCCTGAAGAAAACCACTCTTGCCCTCCATCACCTCTCCA
GTGGGCACCTCAAGTGGGCAGAACATCTCCCGGAAAGGTAAGGCCACCCTCCCACCAGGT
GACCGCCACCTCCTCCTGTTCTCTGCGAGCCTTTCTCTCCTCGAGGGTTGAAGCGTTTGC
TTTGATGCAGGCTTACTTTAGCCTGAGTCAGTGATCACTAGCTCACTAGATCTAGGCCTG
AACTCCAGTGGCTGCCTCTAGAGTTTCCTTCGCAGCGAGGAGAAAACTCCATCTGGACAT
GAGAGCCAGTCAAGCAAGGAGAGTGGCTCACTCACTCACTCGCTTTGGCAGGGACTCCAA
ACTCAGATTCTTGTGGGGCCAAGTGCAGAGCACCCAAGAGCAGCAAAGCAGGCCCAGAGG
GGATTGTTGGGAGCTGCAGTGTGTCTAGCCTACCTCAAGGGGGCAGCCTTACCCAGCCAA
TTGGTGTCCTATAGGAACGTAGGTTGGCCTGGTGTTACCACGCTTTGTACTTTAAAGAAA
AGCTTGGAATCTTATTTTTACATGTAAAATCTCAGTTCTAAATGTTGACAGCGAATTAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34872224|ref|XP_238425.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34872224|ref|XP_238425.2|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               111-228, + strand, RNAz p=0.963561
               

               
               426-545, - strand, RNAz p=0.577847

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               111-228, + strand, RNAz p=0.963561
               

               
               426-545, - strand, RNAz p=0.577847

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC034589, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC034589, +

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               103-228, gnl|bosTau2|chr2 (61166766-61166641)
               

               
               103-228, gnl|canFam2|chr2 (82264581-82264420)
               

               
               103-228, gnl|danRer3|chr23 (23386764-23386914)
               

               
               103-228, gnl|dasNov1|scaffold_12335 (45477-45641)
               

               
               103-228, gnl|echTel1|scaffold_312688 (13087-12925)
               

               
               103-228, gnl|fr1|chrUn (192744040-192744205)
               

               
               103-228, gnl|galGal2|chr21 (4492575-4492713)
               

               
               103-228, gnl|hg17|chr1 (19316695-19316865)
               

               
               103-228, gnl|Hg17|chr1 (19316831-19316706)
               

               
               103-228, gnl|mm7|chr4 (138732734-138732573)
               

               
               103-228, gnl|Mm7|chr4 (138732601-138732726)
               

               
               103-228, gnl|monDom2|scaffold_90 (337494-337657)
               

               
               103-228, gnl|oryCun1|scaffold_171599 (5651-5488)
               

               
               103-228, gnl|panTro1|chr1 (19607785-19607955)
               

               
               103-228, gnl|rheMac2|chr1 (21903501-21903669)
               

               
               103-228, gnl|rn3|chr5 (158166275-158166114)
               

               
               103-228, gnl|tetNig1|chr9 (1247943-1247777)
               


               
               386-1020, gnl|bosTau2|chr2 (61164453-61163849)
               

               
               386-1020, gnl|Hg17|chr1 (19314276-19313104)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-228, gnl|bosTau2|chr2 (61166766-61166641)
               

               
               103-228, gnl|canFam2|chr2 (82264581-82264420)
               

               
               103-228, gnl|danRer3|chr23 (23386764-23386914)
               

               
               103-228, gnl|dasNov1|scaffold_12335 (45477-45641)
               

               
               103-228, gnl|echTel1|scaffold_312688 (13087-12925)
               

               
               103-228, gnl|fr1|chrUn (192744040-192744205)
               

               
               103-228, gnl|galGal2|chr21 (4492575-4492713)
               

               
               103-228, gnl|hg17|chr1 (19316695-19316865)
               

               
               103-228, gnl|Hg17|chr1 (19316831-19316706)
               

               
               103-228, gnl|mm7|chr4 (138732734-138732573)
               

               
               103-228, gnl|Mm7|chr4 (138732601-138732726)
               

               
               103-228, gnl|monDom2|scaffold_90 (337494-337657)
               

               
               103-228, gnl|oryCun1|scaffold_171599 (5651-5488)
               

               
               103-228, gnl|panTro1|chr1 (19607785-19607955)
               

               
               103-228, gnl|rheMac2|chr1 (21903501-21903669)
               

               
               103-228, gnl|rn3|chr5 (158166275-158166114)
               

               
               103-228, gnl|tetNig1|chr9 (1247943-1247777)
               


               
               386-1020, gnl|bosTau2|chr2 (61164453-61163849)
               

               
               386-1020, gnl|Hg17|chr1 (19314276-19313104)

	111-228, + strand, RNAz p=0.963561
	426-545, - strand, RNAz p=0.577847

	103-228, gnl\|bosTau2\|chr2 (61166766-61166641)
	103-228, gnl\|canFam2\|chr2 (82264581-82264420)
	103-228, gnl\|danRer3\|chr23 (23386764-23386914)
	103-228, gnl\|dasNov1\|scaffold_12335 (45477-45641)
	103-228, gnl\|echTel1\|scaffold_312688 (13087-12925)
	103-228, gnl\|fr1\|chrUn (192744040-192744205)
	103-228, gnl\|galGal2\|chr21 (4492575-4492713)
	103-228, gnl\|hg17\|chr1 (19316695-19316865)
	103-228, gnl\|Hg17\|chr1 (19316831-19316706)
	103-228, gnl\|mm7\|chr4 (138732734-138732573)
	103-228, gnl\|Mm7\|chr4 (138732601-138732726)
	103-228, gnl\|monDom2\|scaffold_90 (337494-337657)
	103-228, gnl\|oryCun1\|scaffold_171599 (5651-5488)
	103-228, gnl\|panTro1\|chr1 (19607785-19607955)
	103-228, gnl\|rheMac2\|chr1 (21903501-21903669)
	103-228, gnl\|rn3\|chr5 (158166275-158166114)
	103-228, gnl\|tetNig1\|chr9 (1247943-1247777)

	386-1020, gnl\|bosTau2\|chr2 (61164453-61163849)
	386-1020, gnl\|Hg17\|chr1 (19314276-19313104)