Non-Coding RNA Search

Ss1.1-Mixg-0006f07.5

Sequence:


               
               CCAGCTTCTGTAATTGCATCCACAGCGTCCGTGGAAGCTCTGAGTGCCCAGGGAGGAAGG
ACCGCGTGAGAGCTGCGCCTATCCCTCGGGGCCATGGACTCGGACGCCAGCCTGGTGTCT
AGCCGCCCGTCGTCGCCAGACCCCGATGACCTTTTTCTGCCAGCCCGGAGCAAGGGCAGC
GGGGGCAGCGGCTTCACGGGGGGCACCGTGTCCTCGTCCACACCGAGCGACTGCCCGCCA
GAGTTGAGCACCGAGCTGCGCGGCGCCATGGGAGCAGCGGGCGGGCACCCGGGGGACAAA
CTGGGCGGTGGCGGCTTCAAGTCATCTTCGTCCAGCACCTCGTCGTCCACGTCGTCAGCG
GCTGCGTCGTCCACCAAGAAGGACAAGAAACAGATGACTGAACCCGAGCTGCAGCAGCTA
CGCCTCAAGATCAACAGCCGCGAGCGAAAGCGGATGCACGACCTCAACATCGCCATGGAC
GGGCTGCGCGAGGTCATGCCCTATGCGCACGGCCCGTCCGTGCGCAAGCTCTCCAAAATC
GCCACGCTGCTGCTGGCGCGCAACTACATCCTCATGCTCACCAACTCGCTGGAGGAGATG
AAGCGACTGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGCTTCTGTAATTGCATCCACAGCGTCCGTGGAAGCTCTGAGTGCCCAGGGAGGAAGG
ACCGCGTGAGAGCTGCGCCTATCCCTCGGGGCCATGGACTCGGACGCCAGCCTGGTGTCT
AGCCGCCCGTCGTCGCCAGACCCCGATGACCTTTTTCTGCCAGCCCGGAGCAAGGGCAGC
GGGGGCAGCGGCTTCACGGGGGGCACCGTGTCCTCGTCCACACCGAGCGACTGCCCGCCA
GAGTTGAGCACCGAGCTGCGCGGCGCCATGGGAGCAGCGGGCGGGCACCCGGGGGACAAA
CTGGGCGGTGGCGGCTTCAAGTCATCTTCGTCCAGCACCTCGTCGTCCACGTCGTCAGCG
GCTGCGTCGTCCACCAAGAAGGACAAGAAACAGATGACTGAACCCGAGCTGCAGCAGCTA
CGCCTCAAGATCAACAGCCGCGAGCGAAAGCGGATGCACGACCTCAACATCGCCATGGAC
GGGCTGCGCGAGGTCATGCCCTATGCGCACGGCCCGTCCGTGCGCAAGCTCTCCAAAATC
GCCACGCTGCTGCTGGCGCGCAACTACATCCTCATGCTCACCAACTCGCTGGAGGAGATG
AAGCGACTGGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15617464|gb|AAL02428.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15617464|gb|AAL02428.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               448-567, - strand, RNAz p=0.558076

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               448-567, - strand, RNAz p=0.558076

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               25-612, gnl|bosTau2|chr1 (699051-699647)
               

               
               25-612, gnl|Hg17|chr21 (33320970-33321559)
               

               
               25-612, gnl|Mm7|chr16 (91276244-91276819)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-612, gnl|bosTau2|chr1 (699051-699647)
               

               
               25-612, gnl|Hg17|chr21 (33320970-33321559)
               

               
               25-612, gnl|Mm7|chr16 (91276244-91276819)

	25-612, gnl\|bosTau2\|chr1 (699051-699647)
	25-612, gnl\|Hg17\|chr21 (33320970-33321559)
	25-612, gnl\|Mm7\|chr16 (91276244-91276819)