Non-Coding RNA Search

Ss1.1-Mixg-0007d02.5

Sequence:


               
               CTTTGTTTTTGAGGTGCATGTTTTGGGAGCTGTTGGCTTTCACCTGCAGTTTCTGGTTTT
GTCAGATTTGTGTACCCCCCACCTCCCACCTTTACTGGTTCTTGCTCTTAACCTTGCTCA
TTGAAGATGCTGATATGCCTTGGTCTTGTGCTTACGTATCAGAGAGTGGGCCAGAAAGCA
AGGGAGATTGTGATGCCACCCGCTCCGGAAATTCACTATTTTAGTAATGACAGTAAGTGC
TAACTTCCCAGAGGGACCACAGAGGCTGAGGTCAGATTCTGCTCCCAGGGCTGTCTGACC
ATGTACTTCCCCAGGTTCCTCTTTCCTTCTGAAAAACCCAGTTTAAGTTTGACCCTCTGG
CATTGCTGGGGGTGATGGGATTCATTCTCCTGGCAGAAGTAGTAGAGGCAGTGGTCAGAG
TAATAATATCAACTCACACTCAAAAGGCATTTCCTAAGGGCAGTCCCTGTTGTCAGCCTC
TTATTTAATCCTCACATCAACCTTAAGAGGTCAATGGTCTTTATTAGCCCCATTTTACAT
TTGATAAAACTGTCCCAGGAAGGTTACATAGTTCATCCTAAATCATAGCAACTAGTCAGC
AGTCATGGTATTGTGCCTCAGAGGGGTGCTCTGGTGGGAAAAAATGGTACGGGAAGTTGA
TGTCTTTGGGCAATATAATCCATCTTTATTATTGATGAGAAGCACCATGTGAATACTGAC
ATCTGTGCTGCTCTTCTTGCTCAAAGATGCTTCTCTTGACCCACGGTCGGCCCATGAGGC
ATGTCCTTTGTGTTCTTTTTCCACTGGATGGAAGGTGAGCTTGTGCTCTGCTTTCTCACA
TGTTCTGCTGGTGACCAGTGACAAGAACCAGTGGCCAGTGGCAGGATATAGAGCTTGCTC
ATGGTCAGCAAACGAGACCAATGGTGAGCAATCCACATGGAGAATAAGCCCATAGCTTTG
AAAACTGTCTTTTAACTACATAAGCTGATCTTGGAACTTTTGAGACTTCTTCAGGCCAAA
ATAATAAAACCATTAAGGGTAGGAACTTGGATCTTTTGATTGTTTAGCTTTAATTTGCCC
TGTATGAGTGTCCTCCTTATTCCTGCCCAGTATGATTTCCTGCTGATAATCAAAGGTCTT
GTTATTTTGTCCATGTTTGAAGGCTTTCTGAGACTTAAAGGAAAGCCAAGAATATGAGAT
ATGTATTTCCTTTAAAAACATAAGTGTGTATTTGAAAATGCTGGGCAAATAACTTACTCT
AGATTTGCCCAAAACTTAAACATGTGGCAAATATATAAAAATACAGTCATAGGTTAAGGA
GTTAAATTTTTAATTTGAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGTTTTTGAGGTGCATGTTTTGGGAGCTGTTGGCTTTCACCTGCAGTTTCTGGTTTT
GTCAGATTTGTGTACCCCCCACCTCCCACCTTTACTGGTTCTTGCTCTTAACCTTGCTCA
TTGAAGATGCTGATATGCCTTGGTCTTGTGCTTACGTATCAGAGAGTGGGCCAGAAAGCA
AGGGAGATTGTGATGCCACCCGCTCCGGAAATTCACTATTTTAGTAATGACAGTAAGTGC
TAACTTCCCAGAGGGACCACAGAGGCTGAGGTCAGATTCTGCTCCCAGGGCTGTCTGACC
ATGTACTTCCCCAGGTTCCTCTTTCCTTCTGAAAAACCCAGTTTAAGTTTGACCCTCTGG
CATTGCTGGGGGTGATGGGATTCATTCTCCTGGCAGAAGTAGTAGAGGCAGTGGTCAGAG
TAATAATATCAACTCACACTCAAAAGGCATTTCCTAAGGGCAGTCCCTGTTGTCAGCCTC
TTATTTAATCCTCACATCAACCTTAAGAGGTCAATGGTCTTTATTAGCCCCATTTTACAT
TTGATAAAACTGTCCCAGGAAGGTTACATAGTTCATCCTAAATCATAGCAACTAGTCAGC
AGTCATGGTATTGTGCCTCAGAGGGGTGCTCTGGTGGGAAAAAATGGTACGGGAAGTTGA
TGTCTTTGGGCAATATAATCCATCTTTATTATTGATGAGAAGCACCATGTGAATACTGAC
ATCTGTGCTGCTCTTCTTGCTCAAAGATGCTTCTCTTGACCCACGGTCGGCCCATGAGGC
ATGTCCTTTGTGTTCTTTTTCCACTGGATGGAAGGTGAGCTTGTGCTCTGCTTTCTCACA
TGTTCTGCTGGTGACCAGTGACAAGAACCAGTGGCCAGTGGCAGGATATAGAGCTTGCTC
ATGGTCAGCAAACGAGACCAATGGTGAGCAATCCACATGGAGAATAAGCCCATAGCTTTG
AAAACTGTCTTTTAACTACATAAGCTGATCTTGGAACTTTTGAGACTTCTTCAGGCCAAA
ATAATAAAACCATTAAGGGTAGGAACTTGGATCTTTTGATTGTTTAGCTTTAATTTGCCC
TGTATGAGTGTCCTCCTTATTCCTGCCCAGTATGATTTCCTGCTGATAATCAAAGGTCTT
GTTATTTTGTCCATGTTTGAAGGCTTTCTGAGACTTAAAGGAAAGCCAAGAATATGAGAT
ATGTATTTCCTTTAAAAACATAAGTGTGTATTTGAAAATGCTGGGCAAATAACTTACTCT
AGATTTGCCCAAAACTTAAACATGTGGCAAATATATAAAAATACAGTCATAGGTTAAGGA
GTTAAATTTTTAATTTGAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               705-816, - strand, RNAz p=0.518354

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               705-816, - strand, RNAz p=0.518354

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1340, gnl|bosTau2|chr1 (64776335-64777694)
               

               
               3-1340, gnl|Hg17|chr3 (172968969-172967310)
               

               
               3-1340, gnl|Mm7|chr3 (27804103-27805678)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1340, gnl|bosTau2|chr1 (64776335-64777694)
               

               
               3-1340, gnl|Hg17|chr3 (172968969-172967310)
               

               
               3-1340, gnl|Mm7|chr3 (27804103-27805678)

	3-1340, gnl\|bosTau2\|chr1 (64776335-64777694)
	3-1340, gnl\|Hg17\|chr3 (172968969-172967310)
	3-1340, gnl\|Mm7\|chr3 (27804103-27805678)