Ss1.1-Mixg-0008d05.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCACTGCAGATGAGAGGAACCTGCGGCCCCATGCCTTTTACCAGGTGCACCGCATCACGG GCAAGATGGTGGCCACAGCCAGCTATGAAGCCGTAGTCAGTGGTACCAAGGTGTTGGAGA TGACACTGCTTCCTGAGAACAACATGGCAGCCAACATTGACTGTGCTGGAATCCTGAAGC TTCGGAATTCAGACATTGAGCTGCGGAAGGGTGAGACGGACATCGGGCGCAAGAACACAC GCGTGCGGCTGGTATTCCGGGTACACGTGCCTCAAGGCAGTGGGAAGGTCGTCTCGGTGC AGACAGCATCGGTGCCCATCGAGTGCTCCCAGCGCTCAGCCCAGGAGCTGCCCCAGGTGG AGGCCTACAGCCCCAGTGCCTGCTCTGTGAGAGGAGGGGAGGAGCTAGTGCTGACCGGCT CTAACTTCCTGCCAGACTCCAAGGTCGTGTTCATCGAGAGGGGCCCTGATGGAAAGCTGC AATGGGAGGAGGAGGCCACAGTGAATCGGTTGCAGAGCAATGAGGTGACCCTGACCCTGA CCGTCCCTGAATACAGCAATAAGCGAGTGTCCCGGCCAGTCCAGGTCTACTTTTATGTCT CCAATGGGCGGAGGAAGCGCAGTCCTACCCAGAGTTTCAAGTTCCTGCCTGTGATCTTCA AGGAGGAGCCTCTACCAGATGCATCTCTCCGGGGCTTCCCTTCAGCCTCGGGCCCCCCCT TTGGCTCTGAAATGGACTTCTCACCACCCAGACCCCCTACCCCACCTCCCTATCCCCATG AAGACCCTGCTTATGAAACTCCGTATGTGTCAGAAGGCTTCAGCTATGGCACGCCCCCTC TGTACCCCCAGACAGGACCCCCACCCTCCTACAGACATGGCCTGCGGATGTTCCCGGAGA CCGGGGGTACCACAGGTTGTGCCCGCCCACCTCCAGGCTCCTTCCTTCCCCGGCCCTTCC CTAGTGACCCCTATGGAGGACGGGGCTCCCCCTTTCCCCTGGGGCTGCCGTTTCCTCCTC CTGCCCCCTTCCGACCTCCACTGCCTTCATCCCCACCACTGGAAGGCCCCTTCCCTCCCC AGAGTGGTGTTCATGCCCCCCCTGCTGAGGGATACAATGAGGTAGGGCCGAGCTATGGCC CTGGGGAGGGGGCTCCGGAGCAGGAGAAATCCAGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCACTGCAGATGAGAGGAACCTGCGGCCCCATGCCTTTTACCAGGTGCACCGCATCACGG GCAAGATGGTGGCCACAGCCAGCTATGAAGCCGTAGTCAGTGGTACCAAGGTGTTGGAGA TGACACTGCTTCCTGAGAACAACATGGCAGCCAACATTGACTGTGCTGGAATCCTGAAGC TTCGGAATTCAGACATTGAGCTGCGGAAGGGTGAGACGGACATCGGGCGCAAGAACACAC GCGTGCGGCTGGTATTCCGGGTACACGTGCCTCAAGGCAGTGGGAAGGTCGTCTCGGTGC AGACAGCATCGGTGCCCATCGAGTGCTCCCAGCGCTCAGCCCAGGAGCTGCCCCAGGTGG AGGCCTACAGCCCCAGTGCCTGCTCTGTGAGAGGAGGGGAGGAGCTAGTGCTGACCGGCT CTAACTTCCTGCCAGACTCCAAGGTCGTGTTCATCGAGAGGGGCCCTGATGGAAAGCTGC AATGGGAGGAGGAGGCCACAGTGAATCGGTTGCAGAGCAATGAGGTGACCCTGACCCTGA CCGTCCCTGAATACAGCAATAAGCGAGTGTCCCGGCCAGTCCAGGTCTACTTTTATGTCT CCAATGGGCGGAGGAAGCGCAGTCCTACCCAGAGTTTCAAGTTCCTGCCTGTGATCTTCA AGGAGGAGCCTCTACCAGATGCATCTCTCCGGGGCTTCCCTTCAGCCTCGGGCCCCCCCT TTGGCTCTGAAATGGACTTCTCACCACCCAGACCCCCTACCCCACCTCCCTATCCCCATG AAGACCCTGCTTATGAAACTCCGTATGTGTCAGAAGGCTTCAGCTATGGCACGCCCCCTC TGTACCCCCAGACAGGACCCCCACCCTCCTACAGACATGGCCTGCGGATGTTCCCGGAGA CCGGGGGTACCACAGGTTGTGCCCGCCCACCTCCAGGCTCCTTCCTTCCCCGGCCCTTCC CTAGTGACCCCTATGGAGGACGGGGCTCCCCCTTTCCCCTGGGGCTGCCGTTTCCTCCTC CTGCCCCCTTCCGACCTCCACTGCCTTCATCCCCACCACTGGAAGGCCCCTTCCCTCCCC AGAGTGGTGTTCATGCCCCCCCTGCTGAGGGATACAATGAGGTAGGGCCGAGCTATGGCC CTGGGGAGGGGGCTCCGGAGCAGGAGAAATCCAGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 387-494, + strand, RNAz p=0.742847 | |
| 643-800, - strand, RNAz p=0.873572 | |
| 643-782, - strand, RNAz p=0.883266 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 387-494, + strand, RNAz p=0.742847 | |
| 643-800, - strand, RNAz p=0.873572 | |
| 643-782, - strand, RNAz p=0.883266 |
| Aligned organism(s): 52 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
| 152-327, gnl|bosTau2|chr10 (11834057-11834232) | |
| 152-327, gnl|canFam2|chr8 (7348042-7348226) | |
| 152-327, gnl|danRer3|chr2 (34616513-34616708) | |
| 152-327, gnl|dasNov1|scaffold_11136 (3235-3419) | |
| 152-327, gnl|echTel1|scaffold_175005 (6343-6159) | |
| 152-327, gnl|fr1|chrUn (159337137-159336957) | |
| 152-327, gnl|galGal2|chr2 (56468154-56467970) | |
| 152-327, gnl|hg17|chr14 (23912739-23912923) | |
| 152-327, gnl|Hg17|chr14 (23912738-23912913) | |
| 152-327, gnl|loxAfr1|scaffold_9350 (583-767) | |
| 152-327, gnl|mm7|chr14 (50697245-50697430) | |
| 152-327, gnl|Mm7|chr14 (50697244-50697419) | |
| 152-327, gnl|monDom2|scaffold_12 (25332462-25332278) | |
| 152-327, gnl|oryCun1|scaffold_101296 (4846-4662) | |
| 152-327, gnl|panTro1|chr15 (22816977-22817161) | |
| 152-327, gnl|rheMac2|chr7 (87272028-87272212) | |
| 152-327, gnl|rn3|chr15 (33990468-33990652) | |
| 152-327, gnl|tetNig1|chr5 (2654272-2654452) | |
| 152-327, gnl|xenTro1|scaffold_339 (747493-747676) | |
| 328-494, gnl|bosTau2|chr10 (11834661-11834827) | |
| 328-494, gnl|canFam2|chr8 (7348690-7348849) | |
| 328-494, gnl|danRer3|chr2 (34617599-34617748) | |
| 328-494, gnl|dasNov1|scaffold_11136 (3793-3959) | |
| 328-494, gnl|echTel1|scaffold_175005 (5701-5537) | |
| 328-494, gnl|fr1|chrUn (159336719-159336564) | |
| 328-494, gnl|galGal2|chr2 (56466052-56465898) | |
| 328-494, gnl|hg17|chr14 (23913365-23913531) | |
| 328-494, gnl|Hg17|chr14 (23913372-23913551) | |
| 328-494, gnl|loxAfr1|scaffold_9350 (1551-1717) | |
| 328-494, gnl|mm7|chr14 (50697802-50697968) | |
| 328-494, gnl|Mm7|chr14 (50697809-50697975) | |
| 328-494, gnl|monDom2|scaffold_12 (25331835-25331670) | |
| 328-494, gnl|oryCun1|scaffold_205858 (3805-3981) | |
| 328-494, gnl|panTro1|chr15 (22817603-22817769) | |
| 328-494, gnl|rheMac2|chr7 (87272654-87272820) | |
| 328-494, gnl|rn3|chr15 (33991026-33991192) | |
| 328-494, gnl|tetNig1|chr5 (2654539-2654688) | |
| 328-494, gnl|xenTro1|scaffold_339 (748274-748422) | |
| 643-813, gnl|bosTau2|chr10 (11836386-11836552) | |
| 643-813, gnl|canFam2|chr8 (7350275-7350616) | |
| 643-813, gnl|dasNov1|scaffold_11136 (5346-5682) | |
| 643-813, gnl|echTel1|scaffold_175005 (4357-4022) | |
| 643-813, gnl|hg17|chr14 (23915169-23915499) | |
| 643-813, gnl|Hg17|chr14 (23915331-23915498) | |
| 643-813, gnl|loxAfr1|scaffold_9350 (3352-3689) | |
| 643-813, gnl|mm7|chr14 (50699449-50699735) | |
| 643-813, gnl|Mm7|chr14 (50699566-50699734) | |
| 643-813, gnl|monDom2|scaffold_12 (25329031-25328588) | |
| 643-813, gnl|oryCun1|scaffold_205858 (5229-5534) | |
| 643-813, gnl|panTro1|chr15 (22819403-22819733) | |
| 643-813, gnl|rheMac2|chr7 (87274430-87274760) | |
| 643-813, gnl|rn3|chr15 (33992700-33992974) |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 152-327, gnl|bosTau2|chr10 (11834057-11834232) | |
| 152-327, gnl|canFam2|chr8 (7348042-7348226) | |
| 152-327, gnl|danRer3|chr2 (34616513-34616708) | |
| 152-327, gnl|dasNov1|scaffold_11136 (3235-3419) | |
| 152-327, gnl|echTel1|scaffold_175005 (6343-6159) | |
| 152-327, gnl|fr1|chrUn (159337137-159336957) | |
| 152-327, gnl|galGal2|chr2 (56468154-56467970) | |
| 152-327, gnl|hg17|chr14 (23912739-23912923) | |
| 152-327, gnl|Hg17|chr14 (23912738-23912913) | |
| 152-327, gnl|loxAfr1|scaffold_9350 (583-767) | |
| 152-327, gnl|mm7|chr14 (50697245-50697430) | |
| 152-327, gnl|Mm7|chr14 (50697244-50697419) | |
| 152-327, gnl|monDom2|scaffold_12 (25332462-25332278) | |
| 152-327, gnl|oryCun1|scaffold_101296 (4846-4662) | |
| 152-327, gnl|panTro1|chr15 (22816977-22817161) | |
| 152-327, gnl|rheMac2|chr7 (87272028-87272212) | |
| 152-327, gnl|rn3|chr15 (33990468-33990652) | |
| 152-327, gnl|tetNig1|chr5 (2654272-2654452) | |
| 152-327, gnl|xenTro1|scaffold_339 (747493-747676) | |
| 328-494, gnl|bosTau2|chr10 (11834661-11834827) | |
| 328-494, gnl|canFam2|chr8 (7348690-7348849) | |
| 328-494, gnl|danRer3|chr2 (34617599-34617748) | |
| 328-494, gnl|dasNov1|scaffold_11136 (3793-3959) | |
| 328-494, gnl|echTel1|scaffold_175005 (5701-5537) | |
| 328-494, gnl|fr1|chrUn (159336719-159336564) | |
| 328-494, gnl|galGal2|chr2 (56466052-56465898) | |
| 328-494, gnl|hg17|chr14 (23913365-23913531) | |
| 328-494, gnl|Hg17|chr14 (23913372-23913551) | |
| 328-494, gnl|loxAfr1|scaffold_9350 (1551-1717) | |
| 328-494, gnl|mm7|chr14 (50697802-50697968) | |
| 328-494, gnl|Mm7|chr14 (50697809-50697975) | |
| 328-494, gnl|monDom2|scaffold_12 (25331835-25331670) | |
| 328-494, gnl|oryCun1|scaffold_205858 (3805-3981) | |
| 328-494, gnl|panTro1|chr15 (22817603-22817769) | |
| 328-494, gnl|rheMac2|chr7 (87272654-87272820) | |
| 328-494, gnl|rn3|chr15 (33991026-33991192) | |
| 328-494, gnl|tetNig1|chr5 (2654539-2654688) | |
| 328-494, gnl|xenTro1|scaffold_339 (748274-748422) | |
| 643-813, gnl|bosTau2|chr10 (11836386-11836552) | |
| 643-813, gnl|canFam2|chr8 (7350275-7350616) | |
| 643-813, gnl|dasNov1|scaffold_11136 (5346-5682) | |
| 643-813, gnl|echTel1|scaffold_175005 (4357-4022) | |
| 643-813, gnl|hg17|chr14 (23915169-23915499) | |
| 643-813, gnl|Hg17|chr14 (23915331-23915498) | |
| 643-813, gnl|loxAfr1|scaffold_9350 (3352-3689) | |
| 643-813, gnl|mm7|chr14 (50699449-50699735) | |
| 643-813, gnl|Mm7|chr14 (50699566-50699734) | |
| 643-813, gnl|monDom2|scaffold_12 (25329031-25328588) | |
| 643-813, gnl|oryCun1|scaffold_205858 (5229-5534) | |
| 643-813, gnl|panTro1|chr15 (22819403-22819733) | |
| 643-813, gnl|rheMac2|chr7 (87274430-87274760) | |
| 643-813, gnl|rn3|chr15 (33992700-33992974) |