Ss1.1-Mixg-0008h09.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGCTCCGGCTCAAGTCTGCGCTTCCAGGTTCAGTTTCAGGGTCTCGCCGACCGCGGAGC GGGCAGCCTGGCGCGGACCGCAAGGTTCTCTGGGGGCCCCGGAGTTGGGAAGCGGCGTCC GGGAGCCCCCGGAGGAGGATGGGCTGCGGACACAGCAGGCTGAGTTGCTGCAAACCCCCC AAAAAAGAGGGCCAAGGACCAGATCAGCCACCCAGATCAGAGCCACAGGAACTGGGGCCC CTCAATGGTGACACAACCACGACTGTCCATCTCTGCACATCCGAGGAGGCTGGGCAGCAC CCGAAGGCTATCGCCAGACTTCTCCAGCAACATGAAGAGGACAAGAAGAAATGGGCCCTA CAGGTGGAAAAGGAAAGGGAGCTAGAGCTTGGAGAGAAACTGGATGAACAGCGACGGGTC TTGGAGAAAGAGCATGAGGAGGCTCTGCAAGTCCTCCGGGCCTCCTATGAGCAGGAGAAA GAAGCCCTTACCCACTCCTTCCAGGAGGCCAAGGCGGCCCTGCAGGAGACCATTGATGGC CTCACTGCACAGCTGGAGGCCTTCCAGGCCAAGATGAAGAGGGTAGAGGAGTCCATCCTG AGCCGAGACTACAAGAAGCACATCCAGGAGTACGGGAGCCCCAGCCAGTTCTGGGAGCAG GAGCTGGAGAGCTTACACTTTGTCATCGAAATGAAGAATGAGCGGATTCATGACCTAGAC AAGCGGCTGATCCTCACGGAGACAGTGGAAAGAAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGCTCCGGCTCAAGTCTGCGCTTCCAGGTTCAGTTTCAGGGTCTCGCCGACCGCGGAGC GGGCAGCCTGGCGCGGACCGCAAGGTTCTCTGGGGGCCCCGGAGTTGGGAAGCGGCGTCC GGGAGCCCCCGGAGGAGGATGGGCTGCGGACACAGCAGGCTGAGTTGCTGCAAACCCCCC AAAAAAGAGGGCCAAGGACCAGATCAGCCACCCAGATCAGAGCCACAGGAACTGGGGCCC CTCAATGGTGACACAACCACGACTGTCCATCTCTGCACATCCGAGGAGGCTGGGCAGCAC CCGAAGGCTATCGCCAGACTTCTCCAGCAACATGAAGAGGACAAGAAGAAATGGGCCCTA CAGGTGGAAAAGGAAAGGGAGCTAGAGCTTGGAGAGAAACTGGATGAACAGCGACGGGTC TTGGAGAAAGAGCATGAGGAGGCTCTGCAAGTCCTCCGGGCCTCCTATGAGCAGGAGAAA GAAGCCCTTACCCACTCCTTCCAGGAGGCCAAGGCGGCCCTGCAGGAGACCATTGATGGC CTCACTGCACAGCTGGAGGCCTTCCAGGCCAAGATGAAGAGGGTAGAGGAGTCCATCCTG AGCCGAGACTACAAGAAGCACATCCAGGAGTACGGGAGCCCCAGCCAGTTCTGGGAGCAG GAGCTGGAGAGCTTACACTTTGTCATCGAAATGAAGAATGAGCGGATTCATGACCTAGAC AAGCGGCTGATCCTCACGGAGACAGTGGAAAGAAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 65-185, + strand, RNAz p=0.958276 | |
| 80-174, - strand, RNAz p=0.999712 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 65-185, + strand, RNAz p=0.958276 | |
| 80-174, - strand, RNAz p=0.999712 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-185, gnl|bosTau2|chr7 (43151242-43151042) | |
| 1-185, gnl|canFam2|chr4 (61238546-61238290) | |
| 1-185, gnl|dasNov1|scaffold_154967 (3981-4252) | |
| 1-185, gnl|echTel1|scaffold_50227 (4742-5015) | |
| 1-185, gnl|hg17|chr5 (150583610-150583884) | |
| 1-185, gnl|Hg17|chr5 (150583878-150583678) | |
| 1-185, gnl|mm7|chr11 (55034714-55034877) | |
| 1-185, gnl|oryCun1|scaffold_163549 (5667-5396) | |
| 1-185, gnl|panTro1|chr4 (157536099-157536373) | |
| 1-185, gnl|rheMac2|chr6 (147639907-147640180) | |
| 1-185, gnl|rn3|chr10 (40496283-40496446) | |
| 257-365, gnl|bosTau2|chr7 (43130451-43130343) | |
| 257-365, gnl|Hg17|chr5 (150561442-150561334) | |
| 623-748, gnl|bosTau2|chr7 (43119856-43119731) | |
| 623-748, gnl|canFam2|chr4 (61270014-61269903) | |
| 623-748, gnl|echTel1|scaffold_283833 (50081-50192) | |
| 623-748, gnl|galGal2|chr13 (11969114-11969003) | |
| 623-748, gnl|hg17|chr5 (150545171-150545282) | |
| 623-748, gnl|Hg17|chr5 (150545300-150545175) | |
| 623-748, gnl|mm7|chr11 (55009100-55009211) | |
| 623-748, gnl|Mm7|chr11 (55009229-55009104) | |
| 623-748, gnl|monDom2|scaffold_6 (55304552-55304441) | |
| 623-748, gnl|oryCun1|scaffold_188379 (11258-11369) | |
| 623-748, gnl|panTro1|chr4 (157497907-157498018) | |
| 623-748, gnl|rheMac2|chr6 (147601046-147601157) | |
| 623-748, gnl|rn3|chr10 (40472416-40472527) | |
| 623-748, gnl|tetNig1|chr1 (9355289-9355175) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-185, gnl|bosTau2|chr7 (43151242-43151042) | |
| 1-185, gnl|canFam2|chr4 (61238546-61238290) | |
| 1-185, gnl|dasNov1|scaffold_154967 (3981-4252) | |
| 1-185, gnl|echTel1|scaffold_50227 (4742-5015) | |
| 1-185, gnl|hg17|chr5 (150583610-150583884) | |
| 1-185, gnl|Hg17|chr5 (150583878-150583678) | |
| 1-185, gnl|mm7|chr11 (55034714-55034877) | |
| 1-185, gnl|oryCun1|scaffold_163549 (5667-5396) | |
| 1-185, gnl|panTro1|chr4 (157536099-157536373) | |
| 1-185, gnl|rheMac2|chr6 (147639907-147640180) | |
| 1-185, gnl|rn3|chr10 (40496283-40496446) | |
| 257-365, gnl|bosTau2|chr7 (43130451-43130343) | |
| 257-365, gnl|Hg17|chr5 (150561442-150561334) | |
| 623-748, gnl|bosTau2|chr7 (43119856-43119731) | |
| 623-748, gnl|canFam2|chr4 (61270014-61269903) | |
| 623-748, gnl|echTel1|scaffold_283833 (50081-50192) | |
| 623-748, gnl|galGal2|chr13 (11969114-11969003) | |
| 623-748, gnl|hg17|chr5 (150545171-150545282) | |
| 623-748, gnl|Hg17|chr5 (150545300-150545175) | |
| 623-748, gnl|mm7|chr11 (55009100-55009211) | |
| 623-748, gnl|Mm7|chr11 (55009229-55009104) | |
| 623-748, gnl|monDom2|scaffold_6 (55304552-55304441) | |
| 623-748, gnl|oryCun1|scaffold_188379 (11258-11369) | |
| 623-748, gnl|panTro1|chr4 (157497907-157498018) | |
| 623-748, gnl|rheMac2|chr6 (147601046-147601157) | |
| 623-748, gnl|rn3|chr10 (40472416-40472527) | |
| 623-748, gnl|tetNig1|chr1 (9355289-9355175) |