Non-Coding RNA Search

Ss1.1-Mixg-0009h04.3

Sequence:


               
               AGGAGAGGGCTTCTGCCCATGAATGATCAGACAAGGAGCGTTTCAGTGGTGGGGCGATGA
GCCAGAAAAGAAAACGTATACAGAAAAATGATATGATTTAGTGTTTGTGCCTCTGATGTC
TGTCCCCAAGGTTGGGGGTTGTGGGGGGAGGAGAAATGGAGAGTTATTTGAGGGACTCAT
CTTTGCCAGTATTGTTAATGCCATTTGATGGGAGAGAAAAAATTCAAATGTGTCTCAGAA
TCAAGGGCTGGGCCTTCAGACACGGATGGCCCTCAGTCTGTCAGTCTGTACACCCAGGTA
GCAAAGTCTTCCTCAAACATCTTCACTTGACTTTGAGTCTAAAAAAGTTAAACACTTGTA
TTGTTGGTGTTTCTTTTTTCCTGCTTGATCACAACTGAACTACAGTTTCCTGCTGCTTTC
TGGACAATGAAACATGAACAAAAATATAACTTAGTGTGTTTAATACTTAACCCCTGTTCG
TTATCACCCTAGACTGCCTCCCTAATGTTTTAAAGCCTTTAAAACATTTTTTTTTCCTGC
AAATCTGTTCAGAGTTCCCTAATTTTAGCTTCATCAAACTTAATACAACAAAATACCTTC
AAAAATACAGCATACCTGTAACGTCCATTTACAATGGTTTTCAGTAGACCTATACTTCTC
AAGCATAGGAATATGCTATACCATTGAGAGAAAAAAAATAACTGTATTTAAATACTTACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAGAGGGCTTCTGCCCATGAATGATCAGACAAGGAGCGTTTCAGTGGTGGGGCGATGA
GCCAGAAAAGAAAACGTATACAGAAAAATGATATGATTTAGTGTTTGTGCCTCTGATGTC
TGTCCCCAAGGTTGGGGGTTGTGGGGGGAGGAGAAATGGAGAGTTATTTGAGGGACTCAT
CTTTGCCAGTATTGTTAATGCCATTTGATGGGAGAGAAAAAATTCAAATGTGTCTCAGAA
TCAAGGGCTGGGCCTTCAGACACGGATGGCCCTCAGTCTGTCAGTCTGTACACCCAGGTA
GCAAAGTCTTCCTCAAACATCTTCACTTGACTTTGAGTCTAAAAAAGTTAAACACTTGTA
TTGTTGGTGTTTCTTTTTTCCTGCTTGATCACAACTGAACTACAGTTTCCTGCTGCTTTC
TGGACAATGAAACATGAACAAAAATATAACTTAGTGTGTTTAATACTTAACCCCTGTTCG
TTATCACCCTAGACTGCCTCCCTAATGTTTTAAAGCCTTTAAAACATTTTTTTTTCCTGC
AAATCTGTTCAGAGTTCCCTAATTTTAGCTTCATCAAACTTAATACAACAAAATACCTTC
AAAAATACAGCATACCTGTAACGTCCATTTACAATGGTTTTCAGTAGACCTATACTTCTC
AAGCATAGGAATATGCTATACCATTGAGAGAAAAAAAATAACTGTATTTAAATACTTACA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               308-424, - strand, RNAz p=0.687321
               

               
               582-720, - strand, RNAz p=0.995821

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               308-424, - strand, RNAz p=0.687321
               

               
               582-720, - strand, RNAz p=0.995821

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               582-690, DB288586 UTERU3 Homo sapiens cDNA clone UTERU3017912 5', mRNA 
(dbj|DB288586.1|), blast E-value=0, identity=99.09% 
               

               
               582-690, DKFZp686K23251_r1 686 (synonym (emb|BX486410.1|), blast E-value=0, 
identity=99.09% 
               

               
               582-720, DKFZp468H1512_r1 468 (synonym (emb|CR768971.1|), blast E-value=0, 
identity=93.57% 
               

               
               582-690, tc77a09.x1 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGE 
(gb|AI383252.1|), blast E-value=0, identity=99.09% 
               

               
               582-690, wd48a01.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA clone 
(gb|AI914357.1|), blast E-value=0, identity=99.09% 
               

               
               582-690, UI-E-DW0-agi-m-06-0-UI.r1 UI-E-DW0 Homo sapiens cDNA clone 
(gb|BM705645.1|), blast E-value=0, identity=99.09%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               582-690, DB288586 UTERU3 Homo sapiens cDNA clone UTERU3017912 5', mRNA 
(dbj|DB288586.1|), blast E-value=0, identity=99.09% 
               

               
               582-690, DKFZp686K23251_r1 686 (synonym (emb|BX486410.1|), blast E-value=0, 
identity=99.09% 
               

               
               582-720, DKFZp468H1512_r1 468 (synonym (emb|CR768971.1|), blast E-value=0, 
identity=93.57% 
               

               
               582-690, tc77a09.x1 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGE 
(gb|AI383252.1|), blast E-value=0, identity=99.09% 
               

               
               582-690, wd48a01.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA clone 
(gb|AI914357.1|), blast E-value=0, identity=99.09% 
               

               
               582-690, UI-E-DW0-agi-m-06-0-UI.r1 UI-E-DW0 Homo sapiens cDNA clone 
(gb|BM705645.1|), blast E-value=0, identity=99.09%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-720, gnl|bosTau2|chr3 (56995249-56995958)
               

               
               4-720, gnl|Hg17|chr1 (61637110-61636394)
               

               
               4-720, gnl|Mm7|chr4 (97508140-97507430)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-720, gnl|bosTau2|chr3 (56995249-56995958)
               

               
               4-720, gnl|Hg17|chr1 (61637110-61636394)
               

               
               4-720, gnl|Mm7|chr4 (97508140-97507430)

	308-424, - strand, RNAz p=0.687321
	582-720, - strand, RNAz p=0.995821

	582-690, DB288586 UTERU3 Homo sapiens cDNA clone UTERU3017912 5', mRNA (dbj\|DB288586.1\|), blast E-value=0, identity=99.09%
	582-690, DKFZp686K23251_r1 686 (synonym (emb\|BX486410.1\|), blast E-value=0, identity=99.09%
	582-720, DKFZp468H1512_r1 468 (synonym (emb\|CR768971.1\|), blast E-value=0, identity=93.57%
	582-690, tc77a09.x1 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGE (gb\|AI383252.1\|), blast E-value=0, identity=99.09%
	582-690, wd48a01.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA clone (gb\|AI914357.1\|), blast E-value=0, identity=99.09%
	582-690, UI-E-DW0-agi-m-06-0-UI.r1 UI-E-DW0 Homo sapiens cDNA clone (gb\|BM705645.1\|), blast E-value=0, identity=99.09%

	4-720, gnl\|bosTau2\|chr3 (56995249-56995958)
	4-720, gnl\|Hg17\|chr1 (61637110-61636394)
	4-720, gnl\|Mm7\|chr4 (97508140-97507430)