Non-Coding RNA Search

Ss1.1-Mixg-0009h10.3

Sequence:


               
               GGAAAGCCGCCTGGCATTAGGCTCAGACAGCTAGTCCTGTGCCTCCGGCGCCTGATTTCA
TTCCTCAGGCAGGCCTCCTGGAGGGAAGGGGGGAGAAAAATCTTTGGGGAGGGGAGGCCG
AGATTCCTTAAGTAGCTGGTGGGGTAGAAGAAGGCGCAAGCCAGCCGCTAGGAGAGGACT
TAAAAATACGATGGAGGCTTCTGAGGAAGCTGTGTGTCTAGAGATGATCAAGTTTAGGCA
TGGGGGGCAGGAGAGACTGTGATTTAGTTTGGCTGGCAGGAATAGGTGGTTGCTTTCTTC
TTTTTAAAGACCAGATGCACAGCATTCAGCCTCAGGCCTCTGGATGCCCAGGGATTGTGG
GGTCTGGGTGTGTGGACTTTGGGGGAGAAGAAAAAATTGCCATGTGTGTGTCTGATGTGC
AAACATTTCAAACTTTCCTGGATCCAAATGTGGTGATTGTGCAGACGCTGGTTAGCTTGT
TGTTGTTTTAGGCTTGTAAACAAAAAGAAAAATAAAAACAGAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAGCCGCCTGGCATTAGGCTCAGACAGCTAGTCCTGTGCCTCCGGCGCCTGATTTCA
TTCCTCAGGCAGGCCTCCTGGAGGGAAGGGGGGAGAAAAATCTTTGGGGAGGGGAGGCCG
AGATTCCTTAAGTAGCTGGTGGGGTAGAAGAAGGCGCAAGCCAGCCGCTAGGAGAGGACT
TAAAAATACGATGGAGGCTTCTGAGGAAGCTGTGTGTCTAGAGATGATCAAGTTTAGGCA
TGGGGGGCAGGAGAGACTGTGATTTAGTTTGGCTGGCAGGAATAGGTGGTTGCTTTCTTC
TTTTTAAAGACCAGATGCACAGCATTCAGCCTCAGGCCTCTGGATGCCCAGGGATTGTGG
GGTCTGGGTGTGTGGACTTTGGGGGAGAAGAAAAAATTGCCATGTGTGTGTCTGATGTGC
AAACATTTCAAACTTTCCTGGATCCAAATGTGGTGATTGTGCAGACGCTGGTTAGCTTGT
TGTTGTTTTAGGCTTGTAAACAAAAAGAAAAATAAAAACAGAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               83-198, - strand, RNAz p=0.593359

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               83-198, - strand, RNAz p=0.593359

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               83-370, gnl|bosTau2|chr19 (31220931-31220652)
               

               
               83-370, gnl|canFam2|chr9 (28192399-28192697)
               

               
               83-370, gnl|hg17|chr17 (44035337-44035644)
               

               
               83-370, gnl|Hg17|chr17 (44035720-44035435)
               

               
               83-370, gnl|loxAfr1|scaffold_8696 (33302-33600)
               

               
               83-370, gnl|mm7|chr11 (96403525-96403221)
               

               
               83-370, gnl|Mm7|chr11 (96403153-96403428)
               

               
               83-370, gnl|monDom2|scaffold_18 (45595026-45594696)
               

               
               83-370, gnl|panTro1|chr19_random (42984309-42984616)
               

               
               83-370, gnl|rheMac2|chr16 (32832688-32832995)
               

               
               83-370, gnl|rn3|chr10 (85040037-85039730)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               83-370, gnl|bosTau2|chr19 (31220931-31220652)
               

               
               83-370, gnl|canFam2|chr9 (28192399-28192697)
               

               
               83-370, gnl|hg17|chr17 (44035337-44035644)
               

               
               83-370, gnl|Hg17|chr17 (44035720-44035435)
               

               
               83-370, gnl|loxAfr1|scaffold_8696 (33302-33600)
               

               
               83-370, gnl|mm7|chr11 (96403525-96403221)
               

               
               83-370, gnl|Mm7|chr11 (96403153-96403428)
               

               
               83-370, gnl|monDom2|scaffold_18 (45595026-45594696)
               

               
               83-370, gnl|panTro1|chr19_random (42984309-42984616)
               

               
               83-370, gnl|rheMac2|chr16 (32832688-32832995)
               

               
               83-370, gnl|rn3|chr10 (85040037-85039730)

	83-370, gnl\|bosTau2\|chr19 (31220931-31220652)
	83-370, gnl\|canFam2\|chr9 (28192399-28192697)
	83-370, gnl\|hg17\|chr17 (44035337-44035644)
	83-370, gnl\|Hg17\|chr17 (44035720-44035435)
	83-370, gnl\|loxAfr1\|scaffold_8696 (33302-33600)
	83-370, gnl\|mm7\|chr11 (96403525-96403221)
	83-370, gnl\|Mm7\|chr11 (96403153-96403428)
	83-370, gnl\|monDom2\|scaffold_18 (45595026-45594696)
	83-370, gnl\|panTro1\|chr19_random (42984309-42984616)
	83-370, gnl\|rheMac2\|chr16 (32832688-32832995)
	83-370, gnl\|rn3\|chr10 (85040037-85039730)