Ss1.1-Mixg-0010b12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTCTTTTGTGAATGTGATTTCTTAAAAAAATGAAACAGTTAAAACTTACAGGTTTTGTT ATTTTCTTTTTCTTTTTGACTGAATCCCTAACCCTGCCCACAAAGCCTCAAGATATAGAT GATGTCCGTATCACCAAGAAATTTATAGAAGATAATGTTGTATATATCACCATCATTGCA TTTGCTCAATATATTCAGGAGGCATCCTTTGAAGAAGTAGAAATGTTGGTCAAAGCCATG AAAGAATACAGAGATAGATGCTTGGCTGACATGACACTCCCAGAGTGTTCAAAATTAGCT AATGATGTTTTACTGGAAAATATATGTGCTATGGAGGGGCTGCCGCAAAAGTATAATTTT TCACACTGCTGCCATAAAGTTGACTTTGAAAGAAGACTCTGTTTCCTCCATAATAAGAAA GCTGAAGTAGGATTTCTGCCTCCTCTTCCTACTCTGGATCCTGAAGAGAAATGCCAGACT TATAAAACTAACAAAGAATCCTTTCTAAATAATTATATCTATGAGGTTTCCAGAAGGAAC CCCTTTGTTTTTGCCCCTACACTACTAACTGTTGCTGCTCGTTTTGAGGAGATGGCTGAA ACATGTTGTGAATGCATCAACAGAATTTTCTCTTTGTCCTTCAGGCAGAACCTTTCATAC AATATTTAAAAGCATTGTCTTCTTACCAAAAAAATGTCTGTGGGGCACTTCTGAAATTTG GACCACAAATCTTACAATCTATGTGAGTTTTATAATATGCGTCTTGTTCCTGCTTGTATT TTCTCATCTGTGTCCCATTTTTGTTAAATCAGTGATGACTTTTAATTTATACTCTTCCCA GTCCCGCAGGGGTTTTTGAGGTGAGTCTCAGTCTGTGTGGATTCCTCAGAACCAGGACAT TAGGTCAGAATGAGAGAAAACCTGTAAAATGGGGAGATCCCAGAAGAAAGGGGGCTACTT CTGAGACATTTTTTGGGTTAGTTGGGAATCTGAATGGGTCTGAGAGTTTCCAACCAGGGT TTTAAAACCTCCAAGTACTTTAGACATGACTTATCTATCCGTCTTTGACCTTAATGACCA GGAGACTTACCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTCTTTTGTGAATGTGATTTCTTAAAAAAATGAAACAGTTAAAACTTACAGGTTTTGTT ATTTTCTTTTTCTTTTTGACTGAATCCCTAACCCTGCCCACAAAGCCTCAAGATATAGAT GATGTCCGTATCACCAAGAAATTTATAGAAGATAATGTTGTATATATCACCATCATTGCA TTTGCTCAATATATTCAGGAGGCATCCTTTGAAGAAGTAGAAATGTTGGTCAAAGCCATG AAAGAATACAGAGATAGATGCTTGGCTGACATGACACTCCCAGAGTGTTCAAAATTAGCT AATGATGTTTTACTGGAAAATATATGTGCTATGGAGGGGCTGCCGCAAAAGTATAATTTT TCACACTGCTGCCATAAAGTTGACTTTGAAAGAAGACTCTGTTTCCTCCATAATAAGAAA GCTGAAGTAGGATTTCTGCCTCCTCTTCCTACTCTGGATCCTGAAGAGAAATGCCAGACT TATAAAACTAACAAAGAATCCTTTCTAAATAATTATATCTATGAGGTTTCCAGAAGGAAC CCCTTTGTTTTTGCCCCTACACTACTAACTGTTGCTGCTCGTTTTGAGGAGATGGCTGAA ACATGTTGTGAATGCATCAACAGAATTTTCTCTTTGTCCTTCAGGCAGAACCTTTCATAC AATATTTAAAAGCATTGTCTTCTTACCAAAAAAATGTCTGTGGGGCACTTCTGAAATTTG GACCACAAATCTTACAATCTATGTGAGTTTTATAATATGCGTCTTGTTCCTGCTTGTATT TTCTCATCTGTGTCCCATTTTTGTTAAATCAGTGATGACTTTTAATTTATACTCTTCCCA GTCCCGCAGGGGTTTTTGAGGTGAGTCTCAGTCTGTGTGGATTCCTCAGAACCAGGACAT TAGGTCAGAATGAGAGAAAACCTGTAAAATGGGGAGATCCCAGAAGAAAGGGGGCTACTT CTGAGACATTTTTTGGGTTAGTTGGGAATCTGAATGGGTCTGAGAGTTTCCAACCAGGGT TTTAAAACCTCCAAGTACTTTAGACATGACTTATCTATCCGTCTTTGACCTTAATGACCA GGAGACTTACCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 854-1012, + strand, RNAz p=0.982791 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 854-1012, + strand, RNAz p=0.982791 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 1-118, gnl|bosTau2|chr28 (25495869-25495752) | |
| 1-118, gnl|canFam2|chr13 (65150198-65150552) | |
| 1-118, gnl|echTel1|scaffold_316176 (44387-44745) | |
| 1-118, gnl|hg17|chr4 (74712304-74712651) | |
| 1-118, gnl|Hg17|chr4 (74712500-74712615) | |
| 1-118, gnl|loxAfr1|scaffold_8318 (68438-68103) | |
| 1-118, gnl|mm7|chr5 (90489867-90490225) | |
| 1-118, gnl|Mm7|chr5 (90490067-90490194) | |
| 1-118, gnl|monDom2|scaffold_32 (18578609-18578964) | |
| 1-118, gnl|oryCun1|scaffold_177845 (42397-42031) | |
| 1-118, gnl|panTro1|chr3 (58999470-58999124) | |
| 1-118, gnl|rheMac2|chr5 (56189401-56189056) | |
| 1-118, gnl|rn3|chr14 (19083209-19082857) | |
| 168-300, gnl|bosTau2|chr28 (25491784-25491652) | |
| 168-300, gnl|canFam2|chr13 (65154627-65154777) | |
| 168-300, gnl|dasNov1|scaffold_5878 (50821-50673) | |
| 168-300, gnl|echTel1|scaffold_104350 (2348-2199) | |
| 168-300, gnl|hg17|chr4 (74715005-74715155) | |
| 168-300, gnl|Hg17|chr4 (74715010-74715142) | |
| 168-300, gnl|loxAfr1|scaffold_169348 (919-778) | |
| 168-300, gnl|mm7|chr5 (90493428-90493572) | |
| 168-300, gnl|Mm7|chr5 (90493433-90493565) | |
| 168-300, gnl|monDom2|scaffold_32 (18584329-18584479) | |
| 168-300, gnl|oryCun1|scaffold_177845 (39661-39516) | |
| 168-300, gnl|panTro1|chr3 (58996765-58996615) | |
| 168-300, gnl|rheMac2|chr5 (56186704-56186554) | |
| 168-300, gnl|rn3|chr14 (19080014-19079864) | |
| 301-515, gnl|bosTau2|chr28 (25490944-25490730) | |
| 301-515, gnl|Hg17|chr4 (74716614-74716828) | |
| 301-515, gnl|Mm7|chr5 (90495005-90495219) | |
| 617-1086, gnl|bosTau2|chr28 (25489209-25488739) | |
| 617-1086, gnl|Hg17|chr4 (74718448-74718915) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-118, gnl|bosTau2|chr28 (25495869-25495752) | |
| 1-118, gnl|canFam2|chr13 (65150198-65150552) | |
| 1-118, gnl|echTel1|scaffold_316176 (44387-44745) | |
| 1-118, gnl|hg17|chr4 (74712304-74712651) | |
| 1-118, gnl|Hg17|chr4 (74712500-74712615) | |
| 1-118, gnl|loxAfr1|scaffold_8318 (68438-68103) | |
| 1-118, gnl|mm7|chr5 (90489867-90490225) | |
| 1-118, gnl|Mm7|chr5 (90490067-90490194) | |
| 1-118, gnl|monDom2|scaffold_32 (18578609-18578964) | |
| 1-118, gnl|oryCun1|scaffold_177845 (42397-42031) | |
| 1-118, gnl|panTro1|chr3 (58999470-58999124) | |
| 1-118, gnl|rheMac2|chr5 (56189401-56189056) | |
| 1-118, gnl|rn3|chr14 (19083209-19082857) | |
| 168-300, gnl|bosTau2|chr28 (25491784-25491652) | |
| 168-300, gnl|canFam2|chr13 (65154627-65154777) | |
| 168-300, gnl|dasNov1|scaffold_5878 (50821-50673) | |
| 168-300, gnl|echTel1|scaffold_104350 (2348-2199) | |
| 168-300, gnl|hg17|chr4 (74715005-74715155) | |
| 168-300, gnl|Hg17|chr4 (74715010-74715142) | |
| 168-300, gnl|loxAfr1|scaffold_169348 (919-778) | |
| 168-300, gnl|mm7|chr5 (90493428-90493572) | |
| 168-300, gnl|Mm7|chr5 (90493433-90493565) | |
| 168-300, gnl|monDom2|scaffold_32 (18584329-18584479) | |
| 168-300, gnl|oryCun1|scaffold_177845 (39661-39516) | |
| 168-300, gnl|panTro1|chr3 (58996765-58996615) | |
| 168-300, gnl|rheMac2|chr5 (56186704-56186554) | |
| 168-300, gnl|rn3|chr14 (19080014-19079864) | |
| 301-515, gnl|bosTau2|chr28 (25490944-25490730) | |
| 301-515, gnl|Hg17|chr4 (74716614-74716828) | |
| 301-515, gnl|Mm7|chr5 (90495005-90495219) | |
| 617-1086, gnl|bosTau2|chr28 (25489209-25488739) | |
| 617-1086, gnl|Hg17|chr4 (74718448-74718915) |