Ss1.1-Mixg-0010f09.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTAGATGCCCTAGGAATCCAAGCCTGAAAGACTGGTGATTTTAGATTGATATTCTGTTGA AACTTCCTGGCACCAATGAGGTTAAAATCTTAGACCATCTAGAAAGAAAACATTTAGAGA GATGAGAGGCAGGCTGCCCATTCAGAAGCACCATCTCACCCATCCAGAAGAGCTCCCAAA TTAAGGATCCCGGAGATGCCTTACAAGTAGCGACATGGAAAAGAAGCTGGTGTTGCACAG GTGATATGGATGCAGGAAGAAATGGAAGATGCCTGCAAATAAAAAGTTCTAGGGGTGGAG TGAGGAGGAATCATCTTTCCAAAGGGGAAAGGTGGATGAAGAACAATGAACACTCATATA CCCCCGTTTGGAGTCATCTACTGTAGAGGTGCCAGCTCTTCTCTGAAGAGTCCAACAATA GCACATTCATCAGAGGAGCTGCAGTCGGAGCCCAGGAGGAGACAACGAAAGACTGGGACC AAGGGGACCAGGCTAAAGGGCTGCACCTGTGGTGTATGAAGGTTCCCATGCTTGGGGTCC AATTGGGACTGTAGCTGCTGGCCTGCCCTGAAGAATCAACAATGCGGGCTGGAAGATAAA ATGGAGAATAAAGCACAGAGGCAACACCTTCAAAATTCCAAAGAAACAGACTCTGTCAGT CCCTACTCCTGAGCCAGCTGTGATTGGAGAAGGGGAGGATTATTTCCTGTCTTTGTTTGG TGATTCAAGGAAACTCAACGAACATTCATTACACACCGAGAAAGTTTGGAAGCACTTTTC TATGATTCTTGAAGAAGTAGGCCAATCTAGATCCAGTGCTCTTGGAGACGTTAAAATAGC TGAAGTGAATGTCAAGGGTTTATTCGTGAAGCTCATTAACTCGTCCCTTGACAAAGAACT GGAGATTGGAAATTATATTCTCCAACAAAATGTGGATGGACAAAGAGTCTCTCTGTACCA ATTCCTTCCAGATATCATAATGCAGGCCAATTCCACAGTAACAGTCTGGGCAGCAGCGTC TGAAGCAAAGCATCAGCCACCATCAGATTTTCTTTGGAAGGAGCAAAACAGGTTTAGGAC AGGCCCCAGTTGTACAACAATCCTGTGCAAACCTAATGGTGAAGCTGTTGCCTGGTACAC TCCTGTTCACTGGAAGCAAGCATGGGAGAAATTGGAGACTGATATTGAATTTGACAGATG CTCAGTAGTAGGTTCAGCATCTCGAAGGCACATGTTTCATTGGCCAACAGTTACAACTAC AACTAAAGGAAAACAAGATCAGTCTAAGAAGGACAGCTCAAAATACCAGCTGGAACAAGT TCGGGCTTTCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTAGATGCCCTAGGAATCCAAGCCTGAAAGACTGGTGATTTTAGATTGATATTCTGTTGA AACTTCCTGGCACCAATGAGGTTAAAATCTTAGACCATCTAGAAAGAAAACATTTAGAGA GATGAGAGGCAGGCTGCCCATTCAGAAGCACCATCTCACCCATCCAGAAGAGCTCCCAAA TTAAGGATCCCGGAGATGCCTTACAAGTAGCGACATGGAAAAGAAGCTGGTGTTGCACAG GTGATATGGATGCAGGAAGAAATGGAAGATGCCTGCAAATAAAAAGTTCTAGGGGTGGAG TGAGGAGGAATCATCTTTCCAAAGGGGAAAGGTGGATGAAGAACAATGAACACTCATATA CCCCCGTTTGGAGTCATCTACTGTAGAGGTGCCAGCTCTTCTCTGAAGAGTCCAACAATA GCACATTCATCAGAGGAGCTGCAGTCGGAGCCCAGGAGGAGACAACGAAAGACTGGGACC AAGGGGACCAGGCTAAAGGGCTGCACCTGTGGTGTATGAAGGTTCCCATGCTTGGGGTCC AATTGGGACTGTAGCTGCTGGCCTGCCCTGAAGAATCAACAATGCGGGCTGGAAGATAAA ATGGAGAATAAAGCACAGAGGCAACACCTTCAAAATTCCAAAGAAACAGACTCTGTCAGT CCCTACTCCTGAGCCAGCTGTGATTGGAGAAGGGGAGGATTATTTCCTGTCTTTGTTTGG TGATTCAAGGAAACTCAACGAACATTCATTACACACCGAGAAAGTTTGGAAGCACTTTTC TATGATTCTTGAAGAAGTAGGCCAATCTAGATCCAGTGCTCTTGGAGACGTTAAAATAGC TGAAGTGAATGTCAAGGGTTTATTCGTGAAGCTCATTAACTCGTCCCTTGACAAAGAACT GGAGATTGGAAATTATATTCTCCAACAAAATGTGGATGGACAAAGAGTCTCTCTGTACCA ATTCCTTCCAGATATCATAATGCAGGCCAATTCCACAGTAACAGTCTGGGCAGCAGCGTC TGAAGCAAAGCATCAGCCACCATCAGATTTTCTTTGGAAGGAGCAAAACAGGTTTAGGAC AGGCCCCAGTTGTACAACAATCCTGTGCAAACCTAATGGTGAAGCTGTTGCCTGGTACAC TCCTGTTCACTGGAAGCAAGCATGGGAGAAATTGGAGACTGATATTGAATTTGACAGATG CTCAGTAGTAGGTTCAGCATCTCGAAGGCACATGTTTCATTGGCCAACAGTTACAACTAC AACTAAAGGAAAACAAGATCAGTCTAAGAAGGACAGCTCAAAATACCAGCTGGAACAAGT TCGGGCTTTCCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 815-933, + strand, RNAz p=0.515003 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 815-933, + strand, RNAz p=0.515003 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 111-287, gnl|bosTau2|chr17 (11616721-11616545) | |
| 111-287, gnl|canFam2|chr27 (24751160-24750890) | |
| 111-287, gnl|dasNov1|scaffold_1458 (68748-69012) | |
| 111-287, gnl|echTel1|scaffold_292649 (40016-40234) | |
| 111-287, gnl|hg17|chr12 (25878143-25878415) | |
| 111-287, gnl|Hg17|chr12 (25878326-25878148) | |
| 111-287, gnl|loxAfr1|scaffold_5850 (80219-80004) | |
| 111-287, gnl|monDom2|scaffold_30 (270083-270333) | |
| 111-287, gnl|oryCun1|scaffold_157341 (9541-9826) | |
| 111-287, gnl|panTro1|chrUn_random (52283537-52283810) | |
| 111-287, gnl|rheMac2|chr11 (26107110-26107383) | |
| 393-499, gnl|bosTau2|chr17 (11368250-11368145) | |
| 393-499, gnl|canFam2|chr27 (24917801-24917541) | |
| 393-499, gnl|dasNov1|scaffold_275068 (1277-1512) | |
| 393-499, gnl|echTel1|scaffold_313370 (11366-11624) | |
| 393-499, gnl|hg17|chr12 (25717858-25718111) | |
| 393-499, gnl|Hg17|chr12 (25718072-25717969) | |
| 393-499, gnl|monDom2|scaffold_30 (19556-19793) | |
| 393-499, gnl|oryCun1|scaffold_188227 (25926-25673) | |
| 393-499, gnl|panTro1|chrUn_random (52120190-52120442) | |
| 393-499, gnl|rheMac2|chr11 (25952776-25953028) | |
| 815-1005, gnl|bosTau2|chr19 (42309787-42309977) | |
| 815-1005, gnl|canFam2|chr27 (25069435-25069310) | |
| 815-1005, gnl|echTel1|scaffold_320150 (9894-9769) | |
| 815-1005, gnl|hg17|chr12 (25570961-25571086) | |
| 815-1005, gnl|Hg17|chr12 (25571158-25570968) | |
| 815-1005, gnl|mm7|chr6 (145510543-145510666) | |
| 815-1005, gnl|Mm7|chr6 (145510738-145510548) | |
| 815-1005, gnl|monDom2|scaffold_31 (104069-103945) | |
| 815-1005, gnl|oryCun1|scaffold_201613 (32489-32364) | |
| 815-1005, gnl|panTro1|chrUn_random (51972723-51972848) | |
| 815-1005, gnl|rheMac2|chr11 (25804258-25804383) | |
| 815-1005, gnl|rn3|chr4 (183306884-183307009) | |
| 1119-1332, gnl|bosTau2|chr19 (42315252-42315465) | |
| 1119-1332, gnl|Hg17|chr12 (25564281-25564065) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 111-287, gnl|bosTau2|chr17 (11616721-11616545) | |
| 111-287, gnl|canFam2|chr27 (24751160-24750890) | |
| 111-287, gnl|dasNov1|scaffold_1458 (68748-69012) | |
| 111-287, gnl|echTel1|scaffold_292649 (40016-40234) | |
| 111-287, gnl|hg17|chr12 (25878143-25878415) | |
| 111-287, gnl|Hg17|chr12 (25878326-25878148) | |
| 111-287, gnl|loxAfr1|scaffold_5850 (80219-80004) | |
| 111-287, gnl|monDom2|scaffold_30 (270083-270333) | |
| 111-287, gnl|oryCun1|scaffold_157341 (9541-9826) | |
| 111-287, gnl|panTro1|chrUn_random (52283537-52283810) | |
| 111-287, gnl|rheMac2|chr11 (26107110-26107383) | |
| 393-499, gnl|bosTau2|chr17 (11368250-11368145) | |
| 393-499, gnl|canFam2|chr27 (24917801-24917541) | |
| 393-499, gnl|dasNov1|scaffold_275068 (1277-1512) | |
| 393-499, gnl|echTel1|scaffold_313370 (11366-11624) | |
| 393-499, gnl|hg17|chr12 (25717858-25718111) | |
| 393-499, gnl|Hg17|chr12 (25718072-25717969) | |
| 393-499, gnl|monDom2|scaffold_30 (19556-19793) | |
| 393-499, gnl|oryCun1|scaffold_188227 (25926-25673) | |
| 393-499, gnl|panTro1|chrUn_random (52120190-52120442) | |
| 393-499, gnl|rheMac2|chr11 (25952776-25953028) | |
| 815-1005, gnl|bosTau2|chr19 (42309787-42309977) | |
| 815-1005, gnl|canFam2|chr27 (25069435-25069310) | |
| 815-1005, gnl|echTel1|scaffold_320150 (9894-9769) | |
| 815-1005, gnl|hg17|chr12 (25570961-25571086) | |
| 815-1005, gnl|Hg17|chr12 (25571158-25570968) | |
| 815-1005, gnl|mm7|chr6 (145510543-145510666) | |
| 815-1005, gnl|Mm7|chr6 (145510738-145510548) | |
| 815-1005, gnl|monDom2|scaffold_31 (104069-103945) | |
| 815-1005, gnl|oryCun1|scaffold_201613 (32489-32364) | |
| 815-1005, gnl|panTro1|chrUn_random (51972723-51972848) | |
| 815-1005, gnl|rheMac2|chr11 (25804258-25804383) | |
| 815-1005, gnl|rn3|chr4 (183306884-183307009) | |
| 1119-1332, gnl|bosTau2|chr19 (42315252-42315465) | |
| 1119-1332, gnl|Hg17|chr12 (25564281-25564065) |