Non-Coding RNA Search

Ss1.1-Mixn-0001c15.5

Sequence:


               
               GGTACCGCAGAGAAATCCAAGAAACTGAGGACTACAAGTGAGCCTTCTCAGACTTGTGAT
TGGGGTAATCTCCTTCAGGACATTATTCTTCAAGTATTTAAGTATTTGCCTCTTCTTGAC
CGGGCTCATGCTTCGCAAGTTTGCCGCAACTGGAACCAGGTATTTCACATGCCTGACTTG
TGGAGATGTTTTGAATTTGAACTGAATCAGCCAGCTACATCTTATTTGAAAGCTACACAT
CCAGAGCTGATTAAACAGATTATTAAAAGACATTCAAACCATCTACAATATGTCAGCTTC
AAGGTATCCTCTGTGTGGCAGATCAGTGTCATGGCTTACGTGAGCTGGCCCTGAATTACC
ATTTGTTAAGTGACGAATTGCTGCTTGCTTTATCTTCTGAAAAACATGTTCGATTAGAAC
ATTTGCGCATTGATGTGGTCAGTGAGAATCCTGGACAGACACACTTCCATACTATTCAGA
AGAGCAGCTGGGATGCTTTCATCAGACATTCACCAAAAGTGAACTTAGTGATGTATTTTT
TTTTATATGAAGAGGAATTTGATCCATTCTTTCGGTATGAAATACCTGCCACCCATCTTT
ACTTTGGGAGATCAGTAAGCAAAGATGTGCTTGGCCGTGTGGGAATGACATGCCCTAGAC
TAGTTGAACTAGTAGTGTGTGCTAATGGGTTACGGCCACTTGATGAAGAGTTATTCGCAT
TGCAGAACGTTGCAAAAACTTGTCAGCTATCGAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTACCGCAGAGAAATCCAAGAAACTGAGGACTACAAGTGAGCCTTCTCAGACTTGTGAT
TGGGGTAATCTCCTTCAGGACATTATTCTTCAAGTATTTAAGTATTTGCCTCTTCTTGAC
CGGGCTCATGCTTCGCAAGTTTGCCGCAACTGGAACCAGGTATTTCACATGCCTGACTTG
TGGAGATGTTTTGAATTTGAACTGAATCAGCCAGCTACATCTTATTTGAAAGCTACACAT
CCAGAGCTGATTAAACAGATTATTAAAAGACATTCAAACCATCTACAATATGTCAGCTTC
AAGGTATCCTCTGTGTGGCAGATCAGTGTCATGGCTTACGTGAGCTGGCCCTGAATTACC
ATTTGTTAAGTGACGAATTGCTGCTTGCTTTATCTTCTGAAAAACATGTTCGATTAGAAC
ATTTGCGCATTGATGTGGTCAGTGAGAATCCTGGACAGACACACTTCCATACTATTCAGA
AGAGCAGCTGGGATGCTTTCATCAGACATTCACCAAAAGTGAACTTAGTGATGTATTTTT
TTTTATATGAAGAGGAATTTGATCCATTCTTTCGGTATGAAATACCTGCCACCCATCTTT
ACTTTGGGAGATCAGTAAGCAAAGATGTGCTTGGCCGTGTGGGAATGACATGCCCTAGAC
TAGTTGAACTAGTAGTGTGTGCTAATGGGTTACGGCCACTTGATGAAGAGTTATTCGCAT
TGCAGAACGTTGCAAAAACTTGTCAGCTATCGAACT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|26348773|dbj|BAC38026.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26348773|dbj|BAC38026.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               369-488, - strand, RNAz p=0.903031
               

               
               529-648, + strand, RNAz p=0.890636

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               369-488, - strand, RNAz p=0.903031
               

               
               529-648, + strand, RNAz p=0.890636

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               298-756, gnl|bosTau2|chr12 (26194478-26194937)
               

               
               298-756, gnl|Hg17|chr13 (76479930-76479471)
               

               
               298-756, gnl|Mm7|chr14 (97516377-97515909)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               298-756, gnl|bosTau2|chr12 (26194478-26194937)
               

               
               298-756, gnl|Hg17|chr13 (76479930-76479471)
               

               
               298-756, gnl|Mm7|chr14 (97516377-97515909)

	369-488, - strand, RNAz p=0.903031
	529-648, + strand, RNAz p=0.890636

	298-756, gnl\|bosTau2\|chr12 (26194478-26194937)
	298-756, gnl\|Hg17\|chr13 (76479930-76479471)
	298-756, gnl\|Mm7\|chr14 (97516377-97515909)