Non-Coding RNA Search

Ss1.1-Mixn-0002f06.5

Sequence:


               
               GCAAGCCGCGGGGCCAGCGCGACCAGATGGAGCCTGGGAGAGACCTGGCCTCCCAGCTCT
GCTGGCGTGCTTTTCCTGGGGTCCTTGGAGCCGGGGGAAGGACCCAGATGCCAGCCCCCC
AGCTGAGGGTGACTGCCAGGACCCCGAGGAGGAGCTGGCACTGACAGCCGTGTATCCCAA
CGGAGACTGTGAGGAGACTGGAAAGGGGTCAGGAGCCTGGGATGGAGTTGCCCCCGCTCC
CGCTAAGCCCACTGGAGACTTGAGATGAAAGGCGGACCCCTGGCTGCCCGAACTCTAACC
TGCAGACCGGAGGCTGGCTCCTTTCACTGAGCTGCCCAGCCTCCACGTTGACCTTGGGAT
GGTGGTAGCTACGAAGGCGCCGCCTGCCGGGAGGCTGTTGCATTGACCACCAGGCAGATA
CCAGCCAGGCTGCAGGACTTACTAAGCTAAGCTGGACCTTGGAAAATGTATCCTGGGGAA
CCTGCCCCCCACCTCGTTTTTGCTCACTCTCTGGTCACAGTGGGGTTATTTTTTTCTCTG
TGTGCCTCGATTTCTCTATGCCACTGAGACTTGGAAGTTCTGCTGTGCTGTGGCATCCTG
GGGTTGTTTGCAGGAACATCCATCATTTCAAGGGCAGCTGGGCCAGAAGTCATCAGATCT
GAGAAGGTAGCCGTGGACTTGTCACCTGTCACTCAGCCTTTGGGGCTTCTGTTTCTCAAA
GGCGTAAAAAGCACTGTCAGCCAAGTGGCTCTCAACTAGGGGCCAGGCTGCCCATCCTAG
CAGCACTGGAAGTGTGTGTGTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAGCCGCGGGGCCAGCGCGACCAGATGGAGCCTGGGAGAGACCTGGCCTCCCAGCTCT
GCTGGCGTGCTTTTCCTGGGGTCCTTGGAGCCGGGGGAAGGACCCAGATGCCAGCCCCCC
AGCTGAGGGTGACTGCCAGGACCCCGAGGAGGAGCTGGCACTGACAGCCGTGTATCCCAA
CGGAGACTGTGAGGAGACTGGAAAGGGGTCAGGAGCCTGGGATGGAGTTGCCCCCGCTCC
CGCTAAGCCCACTGGAGACTTGAGATGAAAGGCGGACCCCTGGCTGCCCGAACTCTAACC
TGCAGACCGGAGGCTGGCTCCTTTCACTGAGCTGCCCAGCCTCCACGTTGACCTTGGGAT
GGTGGTAGCTACGAAGGCGCCGCCTGCCGGGAGGCTGTTGCATTGACCACCAGGCAGATA
CCAGCCAGGCTGCAGGACTTACTAAGCTAAGCTGGACCTTGGAAAATGTATCCTGGGGAA
CCTGCCCCCCACCTCGTTTTTGCTCACTCTCTGGTCACAGTGGGGTTATTTTTTTCTCTG
TGTGCCTCGATTTCTCTATGCCACTGAGACTTGGAAGTTCTGCTGTGCTGTGGCATCCTG
GGGTTGTTTGCAGGAACATCCATCATTTCAAGGGCAGCTGGGCCAGAAGTCATCAGATCT
GAGAAGGTAGCCGTGGACTTGTCACCTGTCACTCAGCCTTTGGGGCTTCTGTTTCTCAAA
GGCGTAAAAAGCACTGTCAGCCAAGTGGCTCTCAACTAGGGGCCAGGCTGCCCATCCTAG
CAGCACTGGAAGTGTGTGTGTGTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55618414|ref|XP_516141.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55618414|ref|XP_516141.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               689-804, - strand, RNAz p=0.591198

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               689-804, - strand, RNAz p=0.591198

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               128-804, gnl|bosTau2|chr2 (73091612-73090936)
               

               
               128-804, gnl|Hg17|chr2 (231737101-231737780)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               128-804, gnl|bosTau2|chr2 (73091612-73090936)
               

               
               128-804, gnl|Hg17|chr2 (231737101-231737780)

	128-804, gnl\|bosTau2\|chr2 (73091612-73090936)
	128-804, gnl\|Hg17\|chr2 (231737101-231737780)