Ss1.1-Mixn-0003c09.5
               |  | TGGGGAGCCGAT------------GTCTCAATGGGCACCGGGGTCAGCGCTGGCACTTGG
GCAGCGAACTGTTTGGGCGTCCCTGGCAGTCGGGCGATGTGGTGGGCTGCATGATCGACT
TCACAGAGAACACCATTATCTTCACGCTCAACGGCGAGGTCCTCATGTCCGACTCGGGCT
CTGAAACCGCCTTCCGGGATATCGAGGTTGGGGATGGCTTCCTGCCCGTCTGCAGCTTGG
GACCTGGCCAGGTGGGCCACCTGAACCTGGGCCAGGATGTGAGCTCCCTGCGGTTCTTTG
CCATCTGCGGCCTCCAGGAAGGTTTTGAGCCATTCGCCATCAACATGCAGCGTCCCGTCA
CTACCTGGTTCAGCAAAAGCCTTCCCCAGTTTGAGGCCGTGCCCCTCGAGCATCCCCACT
ACGAGGTGTCTCGTGTGGACGGCACCGTGGACACGCCCCCCTGCCTGCGCCTGACCCACC
GCACCTGGGGCTCCCAGAACAGTCTGGTGGAGATGCTCTTTCTCCGGCTGAGCCTCCCTG
TCCAGTTCCACCAGCACTTCCGCTGCACCGCAGGGGCCACCCCCCTGGCACCACCTGGCC
TGCAGCCCCCTGCTGAGGATGAGGCCCGGGCAGCAGAACCTGATCCCGACTATGAAAACC
TGCGCCGCTCAGCTGGGCGCTGGGGCGAGGCTGAGGGCAGCAAAGAAGGAACTGCCAAGG
AGGGGGCACCCGGGGGCACTGCGCAGGCTGGGGTAGAGGCCCAGCCTCCCAGGGCAGAAA
ATGAGAAGGATGCTACCACAGAGAAGAACAAGAAGAGAGGGTTCCTATTCAAGGCCAAGA
AGGCTGCCATGATGACCCAGCCACCGGCCACCCCGACTCTGCCCATCC | 
Blue-coloured subsequences are predicted RNA structures by RNAz
               |  | TGGGGAGCCGAT------------GTCTCAATGGGCACCGGGGTCAGCGCTGGCACTTGG
GCAGCGAACTGTTTGGGCGTCCCTGGCAGTCGGGCGATGTGGTGGGCTGCATGATCGACT
TCACAGAGAACACCATTATCTTCACGCTCAACGGCGAGGTCCTCATGTCCGACTCGGGCT
CTGAAACCGCCTTCCGGGATATCGAGGTTGGGGATGGCTTCCTGCCCGTCTGCAGCTTGG
GACCTGGCCAGGTGGGCCACCTGAACCTGGGCCAGGATGTGAGCTCCCTGCGGTTCTTTG
CCATCTGCGGCCTCCAGGAAGGTTTTGAGCCATTCGCCATCAACATGCAGCGTCCCGTCA
CTACCTGGTTCAGCAAAAGCCTTCCCCAGTTTGAGGCCGTGCCCCTCGAGCATCCCCACT
ACGAGGTGTCTCGTGTGGACGGCACCGTGGACACGCCCCCCTGCCTGCGCCTGACCCACC
GCACCTGGGGCTCCCAGAACAGTCTGGTGGAGATGCTCTTTCTCCGGCTGAGCCTCCCTG
TCCAGTTCCACCAGCACTTCCGCTGCACCGCAGGGGCCACCCCCCTGGCACCACCTGGCC
TGCAGCCCCCTGCTGAGGATGAGGCCCGGGCAGCAGAACCTGATCCCGACTATGAAAACC
TGCGCCGCTCAGCTGGGCGCTGGGGCGAGGCTGAGGGCAGCAAAGAAGGAACTGCCAAGG
AGGGGGCACCCGGGGGCACTGCGCAGGCTGGGGTAGAGGCCCAGCCTCCCAGGGCAGAAA
ATGAGAAGGATGCTACCACAGAGAAGAACAAGAAGAGAGGGTTCCTATTCAAGGCCAAGA
AGGCTGCCATGATGACCCAGCCACCGGCCACCCCGACTCTGCCCATCC | 
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map