Non-Coding RNA Search

Ss1.1-Mixn-0003e12.5

Sequence:


               
               CCCCCCCTCCACCGAGGAAGCCCAGAGACCCCCTTGTTGGCAGGGGCCCGAGACAGCGCT
CTGGGTCCCAGGGGCCTCCCGGGACGGCTCCCAACTAGCACCGTGGGGGGGGACAGGCCT
GCCTCTGGCGCCAGGGTCTCCTACCCCAGCTCGGCTGTTTGCTCTGGCCACTGCACTTCC
GGAAGCCAGTTCCCGGACAGGGGGGGTCTTCCCTCTGCATCTCACCAGCCCCGTCCGCCG
AGCGTGGCCCGGGCCGGCCCCAGCCCTTGACCTCAGCAGGGGCACTTCCATCCTGTGTCC
TGGAGGCCCCGACGCGTGAAGACACGCCCTCCCCCCAACCCGTTCTCGGCACTGAGATAC
GACAGCCTTTGGGACTGGGGCTTGCCACTGCTTTGTACAACTTAATTAAAAACAAACCCA
ACCAAAAAAAATATAATATAATATATATATATATATACACGTTATATGTATATATGTAAC
ACAGTGCGACCCCAGCACCCAGGGTATAAACTCTGGCACCAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCCCCTCCACCGAGGAAGCCCAGAGACCCCCTTGTTGGCAGGGGCCCGAGACAGCGCT
CTGGGTCCCAGGGGCCTCCCGGGACGGCTCCCAACTAGCACCGTGGGGGGGGACAGGCCT
GCCTCTGGCGCCAGGGTCTCCTACCCCAGCTCGGCTGTTTGCTCTGGCCACTGCACTTCC
GGAAGCCAGTTCCCGGACAGGGGGGGTCTTCCCTCTGCATCTCACCAGCCCCGTCCGCCG
AGCGTGGCCCGGGCCGGCCCCAGCCCTTGACCTCAGCAGGGGCACTTCCATCCTGTGTCC
TGGAGGCCCCGACGCGTGAAGACACGCCCTCCCCCCAACCCGTTCTCGGCACTGAGATAC
GACAGCCTTTGGGACTGGGGCTTGCCACTGCTTTGTACAACTTAATTAAAAACAAACCCA
ACCAAAAAAAATATAATATAATATATATATATATATACACGTTATATGTATATATGTAAC
ACAGTGCGACCCCAGCACCCAGGGTATAAACTCTGGCACCAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               19-119, - strand, RNAz p=0.575104
               

               
               374-528, - strand, RNAz p=0.999384

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               19-119, - strand, RNAz p=0.575104
               

               
               374-528, - strand, RNAz p=0.999384

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               477-520, UI-H-DH1-axi-k-17-0-UI.s1 NCI_CGAP_DH1 Homo sapiens cDNA clone 
(gb|CA442033.1|), blast E-value=0.00000000000001, identity=100% 
               

               
               477-520, 17000424018570 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN420821.1|), blast E-value=0.00000000000001, identity=100% 
               

               
               478-520, E0431C10-5 NIA Mouse E11.5 whole embryo cDNA library (Long) Mus 
(gb|CN700164.1|), blast E-value=0.00000000000004, identity=100% 
               

               
               478-520, oc36d04.y1 No3 mouse (cataract/retinal degeneration) whole eye, 
(gb|CX732879.1|), blast E-value=0.00000000000004, identity=100% 
               

               
               477-520, TC103939 Human fetal brain, large insert, pCMV expression library 
(gb|DR003160.1|), blast E-value=0.00000000000001, identity=100% 
               

               
               477-520, zh50f05.s1 Soares_fetal_liver_spleen_1NFLS_S1 Homo sapiens cDNA 
(gb|W80373.1|), blast E-value=0.00000000000001, identity=100%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               477-520, UI-H-DH1-axi-k-17-0-UI.s1 NCI_CGAP_DH1 Homo sapiens cDNA clone 
(gb|CA442033.1|), blast E-value=0.00000000000001, identity=100% 
               

               
               477-520, 17000424018570 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN420821.1|), blast E-value=0.00000000000001, identity=100% 
               

               
               478-520, E0431C10-5 NIA Mouse E11.5 whole embryo cDNA library (Long) Mus 
(gb|CN700164.1|), blast E-value=0.00000000000004, identity=100% 
               

               
               478-520, oc36d04.y1 No3 mouse (cataract/retinal degeneration) whole eye, 
(gb|CX732879.1|), blast E-value=0.00000000000004, identity=100% 
               

               
               477-520, TC103939 Human fetal brain, large insert, pCMV expression library 
(gb|DR003160.1|), blast E-value=0.00000000000001, identity=100% 
               

               
               477-520, zh50f05.s1 Soares_fetal_liver_spleen_1NFLS_S1 Homo sapiens cDNA 
(gb|W80373.1|), blast E-value=0.00000000000001, identity=100%

Homologous human UTR: 2 entry(ies)

More info

Homologous human UTR: 2 entry(ies)

Help | Less info


               
               3' of NM_001543, -
               

               
               3' of NM_001543, -

Homologous human UTR: 2 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001543, -
               

               
               3' of NM_001543, -

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               19-528, gnl|bosTau2|chr7 (39135398-39134830)
               

               
               19-528, gnl|Hg17|chr5 (149914582-149914041)
               

               
               19-528, gnl|Mm7|chr18 (61077171-61077689)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-528, gnl|bosTau2|chr7 (39135398-39134830)
               

               
               19-528, gnl|Hg17|chr5 (149914582-149914041)
               

               
               19-528, gnl|Mm7|chr18 (61077171-61077689)

	19-119, - strand, RNAz p=0.575104
	374-528, - strand, RNAz p=0.999384

	477-520, UI-H-DH1-axi-k-17-0-UI.s1 NCI_CGAP_DH1 Homo sapiens cDNA clone (gb\|CA442033.1\|), blast E-value=0.00000000000001, identity=100%
	477-520, 17000424018570 GRN_EB Homo sapiens cDNA 5', mRNA sequence (gb\|CN420821.1\|), blast E-value=0.00000000000001, identity=100%
	478-520, E0431C10-5 NIA Mouse E11.5 whole embryo cDNA library (Long) Mus (gb\|CN700164.1\|), blast E-value=0.00000000000004, identity=100%
	478-520, oc36d04.y1 No3 mouse (cataract/retinal degeneration) whole eye, (gb\|CX732879.1\|), blast E-value=0.00000000000004, identity=100%
	477-520, TC103939 Human fetal brain, large insert, pCMV expression library (gb\|DR003160.1\|), blast E-value=0.00000000000001, identity=100%
	477-520, zh50f05.s1 Soares_fetal_liver_spleen_1NFLS_S1 Homo sapiens cDNA (gb\|W80373.1\|), blast E-value=0.00000000000001, identity=100%

	19-528, gnl\|bosTau2\|chr7 (39135398-39134830)
	19-528, gnl\|Hg17\|chr5 (149914582-149914041)
	19-528, gnl\|Mm7\|chr18 (61077171-61077689)