Non-Coding RNA Search

Ss1.1-Mixn-0003l17.5

Sequence:


               
               CCCGCACGGCCATCCGCAACGGGCAGGTGTGGGAGGAGTCCTTAAAGAGACTGCGGCAGA
AAGCCACCCAGACCAACGTCACAGACCCCAGCCTGGACCTGACTGCGCTTTCTTGGGAAG
TGGGCTGTGATGCACCAGTTCCTATGGTGAAATGTGATGAGAACAGCCCTTACCGCACCA
TCACGGGAGACTGTAATAACAGGAGGAACCCAGCTCTGGGCGCCGCCAACAGGGCGCTGG
CGCGCTGGCTGCCGGCAGAGTATGAGGATGGGCTCTCCCTGCCCTTCGGCTGGACGCCGG
GGAAGACGCGGAACGGCTTCCCTGTCCCTCTGGCCCGTGAGGTATCCAACAAGATTGCCG
GCTACCTGAATGAGGAGGATGTTCTGGACCAAAACAGGTCTCTGCTCTTCATGCAGTGGG
GTCAAGTGGTGGACCACGACCTGGACTTTGCCCCCGACACAGAGCTGGGGAGCAGCGAGT
ACTCCAAAGCACAGTGCGATGAGTACTGTATCCAGGGAGACAACTGTTTTCCCATCATGT
TCCCGCGCAATGACGAGAAGGTGAGGACGCAAGGGAAATGCATGCCTTTCTTCCGAGCTG
GGTTTGTCTGCCCCTCTCCGCCTTACCAGTCCTTGGCCCGAGAGCAGATCAACGCTCTGA
CCTCCTTCCTGATGCCAGCTTAGTGTACGGCCCTGAGCCCAGCCTGGCCAGGCTCCTCCG
TGACCTCAGCAGCCCCCTGGGCCTCCTGGCCGTCAACCAGGAGGCCTGGGACCACGGGCT
GGCCTACCCACCCTTTGACAGCAAGAAGCCGAGCCCCTGCGAGTTCATCAACACCACCGC
CCGCGTGCCCTGCTTCCTGGCAGGTGAGTCTAGGCTGGGAACAGAGAGGCTCAAGGGCAA
GGGGCCTATCCTGGAGACTGCGAGCAGAAGGAAGCCAGAAAAACTTCTCGAGGCTGATGG
TTTTACCGTGCTTCTTCTCACCAGTCTTCTAGAAAAACACATACCCAGTCACCACTGCCA
CAGGCACTGGTCCAGGACTGGCAGAAGGGCCAGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGCACGGCCATCCGCAACGGGCAGGTGTGGGAGGAGTCCTTAAAGAGACTGCGGCAGA
AAGCCACCCAGACCAACGTCACAGACCCCAGCCTGGACCTGACTGCGCTTTCTTGGGAAG
TGGGCTGTGATGCACCAGTTCCTATGGTGAAATGTGATGAGAACAGCCCTTACCGCACCA
TCACGGGAGACTGTAATAACAGGAGGAACCCAGCTCTGGGCGCCGCCAACAGGGCGCTGG
CGCGCTGGCTGCCGGCAGAGTATGAGGATGGGCTCTCCCTGCCCTTCGGCTGGACGCCGG
GGAAGACGCGGAACGGCTTCCCTGTCCCTCTGGCCCGTGAGGTATCCAACAAGATTGCCG
GCTACCTGAATGAGGAGGATGTTCTGGACCAAAACAGGTCTCTGCTCTTCATGCAGTGGG
GTCAAGTGGTGGACCACGACCTGGACTTTGCCCCCGACACAGAGCTGGGGAGCAGCGAGT
ACTCCAAAGCACAGTGCGATGAGTACTGTATCCAGGGAGACAACTGTTTTCCCATCATGT
TCCCGCGCAATGACGAGAAGGTGAGGACGCAAGGGAAATGCATGCCTTTCTTCCGAGCTG
GGTTTGTCTGCCCCTCTCCGCCTTACCAGTCCTTGGCCCGAGAGCAGATCAACGCTCTGA
CCTCCTTCCTGATGCCAGCTTAGTGTACGGCCCTGAGCCCAGCCTGGCCAGGCTCCTCCG
TGACCTCAGCAGCCCCCTGGGCCTCCTGGCCGTCAACCAGGAGGCCTGGGACCACGGGCT
GGCCTACCCACCCTTTGACAGCAAGAAGCCGAGCCCCTGCGAGTTCATCAACACCACCGC
CCGCGTGCCCTGCTTCCTGGCAGGTGAGTCTAGGCTGGGAACAGAGAGGCTCAAGGGCAA
GGGGCCTATCCTGGAGACTGCGAGCAGAAGGAAGCCAGAAAAACTTCTCGAGGCTGATGG
TTTTACCGTGCTTCTTCTCACCAGTCTTCTAGAAAAACACATACCCAGTCACCACTGCCA
CAGGCACTGGTCCAGGACTGGCAGAAGGGCCAGATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q7Z2Y6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7Z2Y6_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               371-530, - strand, RNAz p=0.872868
               

               
               402-539, + strand, RNAz p=0.899259

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               371-530, - strand, RNAz p=0.872868
               

               
               402-539, + strand, RNAz p=0.899259

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               335-444, + strand, RNAmicro p=0.989014
               

               
               395-491, - strand, RNAmicro p=0.938052

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               335-444, + strand, RNAmicro p=0.989014
               

               
               395-491, - strand, RNAmicro p=0.938052

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               332-539, gnl|bosTau2|chr19 (2695692-2695899)
               

               
               332-539, gnl|canFam2|chr9 (36235352-36235513)
               

               
               332-539, gnl|danRer3|chr16 (22816274-22816419)
               

               
               332-539, gnl|dasNov1|scaffold_105149 (7008-6859)
               

               
               332-539, gnl|echTel1|scaffold_323737 (100363-100518)
               

               
               332-539, gnl|fr1|chrUn (72614217-72614366)
               

               
               332-539, gnl|galGal2|chr19 (281073-281216)
               

               
               332-539, gnl|hg17|chr17 (53682751-53682912)
               

               
               332-539, gnl|Hg17|chr17 (53682774-53682981)
               

               
               332-539, gnl|loxAfr1|scaffold_6270 (65012-64881)
               

               
               332-539, gnl|mm7|chr11 (87886551-87886391)
               

               
               332-539, gnl|Mm7|chr11 (87886527-87886320)
               

               
               332-539, gnl|monDom2|scaffold_56 (4801224-4801075)
               

               
               332-539, gnl|oryCun1|scaffold_208412 (2351-2511)
               

               
               332-539, gnl|panTro1|chr19_random (39420107-39420268)
               

               
               332-539, gnl|rheMac2|chr16 (42492573-42492734)
               

               
               332-539, gnl|rn3|chr10 (76123781-76123622)
               

               
               332-539, gnl|xenTro1|scaffold_100 (908845-908711)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               332-539, gnl|bosTau2|chr19 (2695692-2695899)
               

               
               332-539, gnl|canFam2|chr9 (36235352-36235513)
               

               
               332-539, gnl|danRer3|chr16 (22816274-22816419)
               

               
               332-539, gnl|dasNov1|scaffold_105149 (7008-6859)
               

               
               332-539, gnl|echTel1|scaffold_323737 (100363-100518)
               

               
               332-539, gnl|fr1|chrUn (72614217-72614366)
               

               
               332-539, gnl|galGal2|chr19 (281073-281216)
               

               
               332-539, gnl|hg17|chr17 (53682751-53682912)
               

               
               332-539, gnl|Hg17|chr17 (53682774-53682981)
               

               
               332-539, gnl|loxAfr1|scaffold_6270 (65012-64881)
               

               
               332-539, gnl|mm7|chr11 (87886551-87886391)
               

               
               332-539, gnl|Mm7|chr11 (87886527-87886320)
               

               
               332-539, gnl|monDom2|scaffold_56 (4801224-4801075)
               

               
               332-539, gnl|oryCun1|scaffold_208412 (2351-2511)
               

               
               332-539, gnl|panTro1|chr19_random (39420107-39420268)
               

               
               332-539, gnl|rheMac2|chr16 (42492573-42492734)
               

               
               332-539, gnl|rn3|chr10 (76123781-76123622)
               

               
               332-539, gnl|xenTro1|scaffold_100 (908845-908711)

	371-530, - strand, RNAz p=0.872868
	402-539, + strand, RNAz p=0.899259

	335-444, + strand, RNAmicro p=0.989014
	395-491, - strand, RNAmicro p=0.938052

	332-539, gnl\|bosTau2\|chr19 (2695692-2695899)
	332-539, gnl\|canFam2\|chr9 (36235352-36235513)
	332-539, gnl\|danRer3\|chr16 (22816274-22816419)
	332-539, gnl\|dasNov1\|scaffold_105149 (7008-6859)
	332-539, gnl\|echTel1\|scaffold_323737 (100363-100518)
	332-539, gnl\|fr1\|chrUn (72614217-72614366)
	332-539, gnl\|galGal2\|chr19 (281073-281216)
	332-539, gnl\|hg17\|chr17 (53682751-53682912)
	332-539, gnl\|Hg17\|chr17 (53682774-53682981)
	332-539, gnl\|loxAfr1\|scaffold_6270 (65012-64881)
	332-539, gnl\|mm7\|chr11 (87886551-87886391)
	332-539, gnl\|Mm7\|chr11 (87886527-87886320)
	332-539, gnl\|monDom2\|scaffold_56 (4801224-4801075)
	332-539, gnl\|oryCun1\|scaffold_208412 (2351-2511)
	332-539, gnl\|panTro1\|chr19_random (39420107-39420268)
	332-539, gnl\|rheMac2\|chr16 (42492573-42492734)
	332-539, gnl\|rn3\|chr10 (76123781-76123622)
	332-539, gnl\|xenTro1\|scaffold_100 (908845-908711)