Non-Coding RNA Search

Ss1.1-Mixn-0003l19.5

Sequence:


               
               CGGGCCTCTGGTGGCAACGGCGCCCTGGACGTCAACCGCAACGAGAGCGTGGGCCACGAG
ATGGCCGTGCTGGAGGAGGAGCTGCGGCACCTCGAGTTCAAGTGCCGCAACATCCTGCGG
GCGCAGAAGATGCAGCAGCTGCGGGAGCGCTGCATGAAGGCCTGGCTGCTGGAGGAGGAG
AGCCTCTATGACCTGGGGGCCGGCGAGCCCAAGAAGCACGAGCTGTCCGACATCTCCGAG
CTGCCCGAGAAGTCGGACAAGGACAGCACCAGCGTCTACAACACGGGCGAGAGCTGCCGC
AGCACCCCGCTGCTGGCCGAGCCCCTGGCGGAGAGCCCCCTGAGGCGGGCCGCCGCTGCC
GCCGCCGCCGCCGCCGGCAACTCCAACCTGAACCGGACCCCCTCCGGCCCCCCCGTCGCC
ACCCCCCCCAAGGCCACCCCTCCGCAGGGCAGTCCCGCCAAGTTCCGGTCCCTCTCCCGG
GACCCCGAGGTGGCCCGGAGACAGCACTCAGAGGAGCGTGTCCGCCGCAGCCCCAAGACC
GGGGTGACCCTGGAGCGCGTGGGCCCCGAAGGCAGCCCTTACCTGTCGCGCCGCCACCGC
GGCCAGGGCCAGGAGGGTGAGCACTACCACAGCTGCATGCAGCTGGGCCCGCCGCGCAGC
CTGGAAAAGCTGGGCCACGGCCCCTCTCGGTTTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGCCTCTGGTGGCAACGGCGCCCTGGACGTCAACCGCAACGAGAGCGTGGGCCACGAG
ATGGCCGTGCTGGAGGAGGAGCTGCGGCACCTCGAGTTCAAGTGCCGCAACATCCTGCGG
GCGCAGAAGATGCAGCAGCTGCGGGAGCGCTGCATGAAGGCCTGGCTGCTGGAGGAGGAG
AGCCTCTATGACCTGGGGGCCGGCGAGCCCAAGAAGCACGAGCTGTCCGACATCTCCGAG
CTGCCCGAGAAGTCGGACAAGGACAGCACCAGCGTCTACAACACGGGCGAGAGCTGCCGC
AGCACCCCGCTGCTGGCCGAGCCCCTGGCGGAGAGCCCCCTGAGGCGGGCCGCCGCTGCC
GCCGCCGCCGCCGCCGGCAACTCCAACCTGAACCGGACCCCCTCCGGCCCCCCCGTCGCC
ACCCCCCCCAAGGCCACCCCTCCGCAGGGCAGTCCCGCCAAGTTCCGGTCCCTCTCCCGG
GACCCCGAGGTGGCCCGGAGACAGCACTCAGAGGAGCGTGTCCGCCGCAGCCCCAAGACC
GGGGTGACCCTGGAGCGCGTGGGCCCCGAAGGCAGCCCTTACCTGTCGCGCCGCCACCGC
GGCCAGGGCCAGGAGGGTGAGCACTACCACAGCTGCATGCAGCTGGGCCCGCCGCGCAGC
CTGGAAAAGCTGGGCCACGGCCCCTCTCGGTTTTGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-319, + strand, RNAz p=0.9962

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-319, + strand, RNAz p=0.9962

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               286-484, - strand, RNAmicro p=0.999376

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               286-484, - strand, RNAmicro p=0.999376

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               1-314, BX431662 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone 
(emb|BX431662.2|), blast E-value=0, identity=93.02% 
               

               
               1-314, PM3-CN0100-180101-001-b09 CN0100 Homo sapiens cDNA, mRNA sequence 
(gb|BG979965.1|), blast E-value=0, identity=93.02% 
               

               
               1-314, 603021062R1 NIH_MGC_114 Homo sapiens cDNA clone IMAGE (gb|BI489058.1|), 
blast E-value=0, identity=94.59% 
               

               
               1-314, 603021126R1 NIH_MGC_114 Homo sapiens cDNA clone IMAGE (gb|BI489090.1|), 
blast E-value=0, identity=94.27% 
               

               
               1-314, AGENCOURT_40991944 NIH_MGC_281 Homo sapiens cDNA clone (gb|CX757785.1|), 
blast E-value=0, identity=94.59% 
               

               
               17-319, LB02746.CR_H11 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|EE347248.1|), 
blast E-value=0, identity=93.4%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               1-314, BX431662 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone 
(emb|BX431662.2|), blast E-value=0, identity=93.02% 
               

               
               1-314, PM3-CN0100-180101-001-b09 CN0100 Homo sapiens cDNA, mRNA sequence 
(gb|BG979965.1|), blast E-value=0, identity=93.02% 
               

               
               1-314, 603021062R1 NIH_MGC_114 Homo sapiens cDNA clone IMAGE (gb|BI489058.1|), 
blast E-value=0, identity=94.59% 
               

               
               1-314, 603021126R1 NIH_MGC_114 Homo sapiens cDNA clone IMAGE (gb|BI489090.1|), 
blast E-value=0, identity=94.27% 
               

               
               1-314, AGENCOURT_40991944 NIH_MGC_281 Homo sapiens cDNA clone (gb|CX757785.1|), 
blast E-value=0, identity=94.59% 
               

               
               17-319, LB02746.CR_H11 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|EE347248.1|), 
blast E-value=0, identity=93.4%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-685, gnl|bosTau2|chrX (13481140-13481821)
               

               
               1-685, gnl|Hg17|chrX (152590830-152590164)
               

               
               1-685, gnl|Mm7|chrX (69182200-69181540)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-685, gnl|bosTau2|chrX (13481140-13481821)
               

               
               1-685, gnl|Hg17|chrX (152590830-152590164)
               

               
               1-685, gnl|Mm7|chrX (69182200-69181540)

	1-314, BX431662 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone (emb\|BX431662.2\|), blast E-value=0, identity=93.02%
	1-314, PM3-CN0100-180101-001-b09 CN0100 Homo sapiens cDNA, mRNA sequence (gb\|BG979965.1\|), blast E-value=0, identity=93.02%
	1-314, 603021062R1 NIH_MGC_114 Homo sapiens cDNA clone IMAGE (gb\|BI489058.1\|), blast E-value=0, identity=94.59%
	1-314, 603021126R1 NIH_MGC_114 Homo sapiens cDNA clone IMAGE (gb\|BI489090.1\|), blast E-value=0, identity=94.27%
	1-314, AGENCOURT_40991944 NIH_MGC_281 Homo sapiens cDNA clone (gb\|CX757785.1\|), blast E-value=0, identity=94.59%
	17-319, LB02746.CR_H11 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb\|EE347248.1\|), blast E-value=0, identity=93.4%

	1-685, gnl\|bosTau2\|chrX (13481140-13481821)
	1-685, gnl\|Hg17\|chrX (152590830-152590164)
	1-685, gnl\|Mm7\|chrX (69182200-69181540)