Ss1.1-Mixn-0004c09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCAAACTGCCTCATGGCACGTTCCTCCAAATACTTCTGCTCCCACTTGGTCATGTCGGC CTCCAGGGCCAGGACCTGCTCCTCCTTTTCCCGGAGCTGTTCCGACAGCCTCAGGGCACT GAGCTCCGGGGACCCACCACTGCCACTGCCACAGGTGGGAGTGCCTGCCTGTCTCTGCTG CGCACGCAGGGCCTTGAGTTCCTGCTCTAGGCGCGTCCGCAGACGTAGCTCCAGTTGCTC TCGCTTCTCACAGGCAGCCTGCAGCTGCCCCAAGGCCTGCTGCAGCCTCTCCACCTTCTC CACATAGGCCTGCTTCTTGCGCAGCTCCTCCTCAGCCCGTGCTGCCCGGCCCTGGGCGTT GCTCAGAGCCTGCTCCAGCAGCTCAGCGCGCCGCCGCTGGTCCTCGATGGCTCCGCGCAG CAGTGCCATCTCCCGCTCCAGCTTCTCCTGCTCCTGCTGCTGCTCGTAGCTATGAGCCAG CAGCTTGGCCACCATGTCCTGACTGCCTGCCTGGGCCTCCTGTGTCTTGCTTGCCAGGCG GCGGTTTGCAGATTCCAATCTTTCTCTAAGATCCCGGTTGAAGTCCTGCAGCCTCCTCAT CTCACTGTCCATCTTGTTTCGCATAGTCTTCTCCAGGGCCTCCCTCTTGGAAGAGGCCCT CGTCAGGCTCTCATGGGCCTCAGAGAGCCTCTGGATTTCATTCTCCAGCTTCTCGATGCG ACCCGCCTCTCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCAAACTGCCTCATGGCACGTTCCTCCAAATACTTCTGCTCCCACTTGGTCATGTCGGC CTCCAGGGCCAGGACCTGCTCCTCCTTTTCCCGGAGCTGTTCCGACAGCCTCAGGGCACT GAGCTCCGGGGACCCACCACTGCCACTGCCACAGGTGGGAGTGCCTGCCTGTCTCTGCTG CGCACGCAGGGCCTTGAGTTCCTGCTCTAGGCGCGTCCGCAGACGTAGCTCCAGTTGCTC TCGCTTCTCACAGGCAGCCTGCAGCTGCCCCAAGGCCTGCTGCAGCCTCTCCACCTTCTC CACATAGGCCTGCTTCTTGCGCAGCTCCTCCTCAGCCCGTGCTGCCCGGCCCTGGGCGTT GCTCAGAGCCTGCTCCAGCAGCTCAGCGCGCCGCCGCTGGTCCTCGATGGCTCCGCGCAG CAGTGCCATCTCCCGCTCCAGCTTCTCCTGCTCCTGCTGCTGCTCGTAGCTATGAGCCAG CAGCTTGGCCACCATGTCCTGACTGCCTGCCTGGGCCTCCTGTGTCTTGCTTGCCAGGCG GCGGTTTGCAGATTCCAATCTTTCTCTAAGATCCCGGTTGAAGTCCTGCAGCCTCCTCAT CTCACTGTCCATCTTGTTTCGCATAGTCTTCTCCAGGGCCTCCCTCTTGGAAGAGGCCCT CGTCAGGCTCTCATGGGCCTCAGAGAGCCTCTGGATTTCATTCTCCAGCTTCTCGATGCG ACCCGCCTCTCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 564-710, + strand, RNAz p=0.989841 | |
| 593-710, - strand, RNAz p=0.985704 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 564-710, + strand, RNAz p=0.989841 | |
| 593-710, - strand, RNAz p=0.985704 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC011454, - |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 1-129, gnl|bosTau2|chr15 (5587445-5587317) | |
| 1-129, gnl|canFam2|chr21 (9124782-9124572) | |
| 1-129, gnl|danRer3|chr21 (34777392-34777193) | |
| 1-129, gnl|dasNov1|scaffold_106267 (1091-1304) | |
| 1-129, gnl|echTel1|scaffold_278156 (2622-2400) | |
| 1-129, gnl|fr1|chrUn (279668787-279668583) | |
| 1-129, gnl|galGal2|chr1 (177317047-177316842) | |
| 1-129, gnl|hg17|chr11 (94232330-94232553) | |
| 1-129, gnl|Hg17|chr11 (94232496-94232368) | |
| 1-129, gnl|loxAfr1|scaffold_123186 (4624-4847) | |
| 1-129, gnl|mm7|chr9 (14390561-14390356) | |
| 1-129, gnl|Mm7|chr9 (14390393-14390521) | |
| 1-129, gnl|monDom2|scaffold_15 (2638929-2638723) | |
| 1-129, gnl|oryCun1|scaffold_174396 (34571-34349) | |
| 1-129, gnl|panTro1|chr9 (96153606-96153829) | |
| 1-129, gnl|rheMac2|chr14 (93397826-93398049) | |
| 1-129, gnl|rn3|chr8 (11305093-11304888) | |
| 1-129, gnl|tetNig1|chr7 (1481675-1481501) | |
| 1-129, gnl|xenTro1|scaffold_567 (83480-83276) | |
| 175-326, gnl|bosTau2|chr15 (5581498-5581347) | |
| 175-326, gnl|canFam2|chr21 (9128500-9128344) | |
| 175-326, gnl|danRer3|chr21 (34782596-34782440) | |
| 175-326, gnl|dasNov1|scaffold_38156 (8386-8540) | |
| 175-326, gnl|echTel1|scaffold_320641 (1632-1788) | |
| 175-326, gnl|fr1|chrUn (279669199-279669045) | |
| 175-326, gnl|galGal2|chr1 (177319951-177319795) | |
| 175-326, gnl|hg17|chr11 (94226743-94226899) | |
| 175-326, gnl|Hg17|chr11 (94226895-94226744) | |
| 175-326, gnl|loxAfr1|scaffold_46866 (5944-6100) | |
| 175-326, gnl|mm7|chr9 (14393400-14393244) | |
| 175-326, gnl|Mm7|chr9 (14393246-14393397) | |
| 175-326, gnl|monDom2|scaffold_15 (2653447-2653291) | |
| 175-326, gnl|oryCun1|scaffold_174396 (39729-39574) | |
| 175-326, gnl|panTro1|chr9 (96148018-96148174) | |
| 175-326, gnl|rheMac2|chr14 (93392220-93392376) | |
| 175-326, gnl|rn3|chr8 (11307787-11307631) | |
| 175-326, gnl|tetNig1|chr7 (1481996-1481841) | |
| 175-326, gnl|xenTro1|scaffold_567 (85521-85365) | |
| 564-710, gnl|bosTau2|chr1 (88092199-88092345) | |
| 564-710, gnl|canFam2|chr23 (34211203-34211361) | |
| 564-710, gnl|danRer3|chr6 (12684966-12685133) | |
| 564-710, gnl|dasNov1|scaffold_4397 (56719-56564) | |
| 564-710, gnl|echTel1|scaffold_324028 (38059-38226) | |
| 564-710, gnl|fr1|chrUn (181728371-181728208) | |
| 564-710, gnl|galGal2|chr9 (9139301-9139454) | |
| 564-710, gnl|hg17|chr3 (135567809-135567977) | |
| 564-710, gnl|Hg17|chr3 (135567823-135567969) | |
| 564-710, gnl|loxAfr1|scaffold_27722 (23777-23944) | |
| 564-710, gnl|mm7|chr9 (102417023-102416855) | |
| 564-710, gnl|Mm7|chr9 (102417007-102416861) | |
| 564-710, gnl|monDom2|scaffold_24 (28068715-28068877) | |
| 564-710, gnl|oryCun1|scaffold_215240 (114957-114799) | |
| 564-710, gnl|panTro1|chr2 (137756349-137756517) | |
| 564-710, gnl|rheMac2|chr2 (153388215-153388047) | |
| 564-710, gnl|rn3|chr8 (107720954-107720786) | |
| 564-710, gnl|tetNig1|chr15 (5773914-5773743) | |
| 564-710, gnl|xenTro1|scaffold_346 (1198742-1198906) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-129, gnl|bosTau2|chr15 (5587445-5587317) | |
| 1-129, gnl|canFam2|chr21 (9124782-9124572) | |
| 1-129, gnl|danRer3|chr21 (34777392-34777193) | |
| 1-129, gnl|dasNov1|scaffold_106267 (1091-1304) | |
| 1-129, gnl|echTel1|scaffold_278156 (2622-2400) | |
| 1-129, gnl|fr1|chrUn (279668787-279668583) | |
| 1-129, gnl|galGal2|chr1 (177317047-177316842) | |
| 1-129, gnl|hg17|chr11 (94232330-94232553) | |
| 1-129, gnl|Hg17|chr11 (94232496-94232368) | |
| 1-129, gnl|loxAfr1|scaffold_123186 (4624-4847) | |
| 1-129, gnl|mm7|chr9 (14390561-14390356) | |
| 1-129, gnl|Mm7|chr9 (14390393-14390521) | |
| 1-129, gnl|monDom2|scaffold_15 (2638929-2638723) | |
| 1-129, gnl|oryCun1|scaffold_174396 (34571-34349) | |
| 1-129, gnl|panTro1|chr9 (96153606-96153829) | |
| 1-129, gnl|rheMac2|chr14 (93397826-93398049) | |
| 1-129, gnl|rn3|chr8 (11305093-11304888) | |
| 1-129, gnl|tetNig1|chr7 (1481675-1481501) | |
| 1-129, gnl|xenTro1|scaffold_567 (83480-83276) | |
| 175-326, gnl|bosTau2|chr15 (5581498-5581347) | |
| 175-326, gnl|canFam2|chr21 (9128500-9128344) | |
| 175-326, gnl|danRer3|chr21 (34782596-34782440) | |
| 175-326, gnl|dasNov1|scaffold_38156 (8386-8540) | |
| 175-326, gnl|echTel1|scaffold_320641 (1632-1788) | |
| 175-326, gnl|fr1|chrUn (279669199-279669045) | |
| 175-326, gnl|galGal2|chr1 (177319951-177319795) | |
| 175-326, gnl|hg17|chr11 (94226743-94226899) | |
| 175-326, gnl|Hg17|chr11 (94226895-94226744) | |
| 175-326, gnl|loxAfr1|scaffold_46866 (5944-6100) | |
| 175-326, gnl|mm7|chr9 (14393400-14393244) | |
| 175-326, gnl|Mm7|chr9 (14393246-14393397) | |
| 175-326, gnl|monDom2|scaffold_15 (2653447-2653291) | |
| 175-326, gnl|oryCun1|scaffold_174396 (39729-39574) | |
| 175-326, gnl|panTro1|chr9 (96148018-96148174) | |
| 175-326, gnl|rheMac2|chr14 (93392220-93392376) | |
| 175-326, gnl|rn3|chr8 (11307787-11307631) | |
| 175-326, gnl|tetNig1|chr7 (1481996-1481841) | |
| 175-326, gnl|xenTro1|scaffold_567 (85521-85365) | |
| 564-710, gnl|bosTau2|chr1 (88092199-88092345) | |
| 564-710, gnl|canFam2|chr23 (34211203-34211361) | |
| 564-710, gnl|danRer3|chr6 (12684966-12685133) | |
| 564-710, gnl|dasNov1|scaffold_4397 (56719-56564) | |
| 564-710, gnl|echTel1|scaffold_324028 (38059-38226) | |
| 564-710, gnl|fr1|chrUn (181728371-181728208) | |
| 564-710, gnl|galGal2|chr9 (9139301-9139454) | |
| 564-710, gnl|hg17|chr3 (135567809-135567977) | |
| 564-710, gnl|Hg17|chr3 (135567823-135567969) | |
| 564-710, gnl|loxAfr1|scaffold_27722 (23777-23944) | |
| 564-710, gnl|mm7|chr9 (102417023-102416855) | |
| 564-710, gnl|Mm7|chr9 (102417007-102416861) | |
| 564-710, gnl|monDom2|scaffold_24 (28068715-28068877) | |
| 564-710, gnl|oryCun1|scaffold_215240 (114957-114799) | |
| 564-710, gnl|panTro1|chr2 (137756349-137756517) | |
| 564-710, gnl|rheMac2|chr2 (153388215-153388047) | |
| 564-710, gnl|rn3|chr8 (107720954-107720786) | |
| 564-710, gnl|tetNig1|chr15 (5773914-5773743) | |
| 564-710, gnl|xenTro1|scaffold_346 (1198742-1198906) |