Ss1.1-Mixn-0004g07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGCGAGCGCTGCGTGGCGCTGCTGCAGATGAACGGCGCGGCCGCGCGGCGCTTCTACCA GCACGCGCACGAGCACACGGCCTGCGCCAACATAGCCAAGCTGATCCACGTGATCCGCCA CTGCCTGAACGCCTGCATCCGGAGGGCCCTGAGCGCCTGCGGGGAGGACGAGGAGGAGCG CGGGAAGGAGAACGCGAGCGTTCTGGACCAAACGCTGTCAGTAAGCGACACTGCGTCCAT GGCAGGCTTGCTAGAGGTTGTCGTGATTCTCTGGAGAAGCATCTACCGGAGCTTGGAGAG CAACAAAGAGGCCCAAGGCTACACCGTCAGCAAGTTCGCCTCTGTGCTGCCCGAGTACAT GAAAGTGTTCAAGGATGACCGCTGCAAGACCCCTTTGTCCATGCTGGCCTCCCTGATGCC TGCCTCGGCCGTGCCCGCCTTCAGGTGCCCGCCCTTGTCTCCCGCCTGCAGATCTCACAC TCAGCCGAGGCCCTCGACCTCCAGTCCCCAGAGCTGCTCGCCCTCCCCCACGGCAGGAAG GCCAGGGGTGCGGCTGCCCACTCCAGGGTGGCCGAGGGACTTGGAAAGAGACCATGGGAA CTGAAACCGCCCTCCGCTGTAGAGGCAGGAACTGTTCAAGTGCAGGGCGGTGAGACTTGG GCCGCGCTGCCGGCCACCACGCAGCTTTGGCCACACGTGGCGCTGGGCCTGTGGGTGGCT GGGCTGTGGGTGCAGCTCACAGACTTGGGGACCTGGTGCGAAAAGACGGACGGTTTCCTG CATCACCCCCTGCACGTGCGGCCTCGAATTATGTTTCTTATTGGTCAGCTTTGTTCTAGA GTGTTGGTTATTAAATCAGAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGCGAGCGCTGCGTGGCGCTGCTGCAGATGAACGGCGCGGCCGCGCGGCGCTTCTACCA GCACGCGCACGAGCACACGGCCTGCGCCAACATAGCCAAGCTGATCCACGTGATCCGCCA CTGCCTGAACGCCTGCATCCGGAGGGCCCTGAGCGCCTGCGGGGAGGACGAGGAGGAGCG CGGGAAGGAGAACGCGAGCGTTCTGGACCAAACGCTGTCAGTAAGCGACACTGCGTCCAT GGCAGGCTTGCTAGAGGTTGTCGTGATTCTCTGGAGAAGCATCTACCGGAGCTTGGAGAG CAACAAAGAGGCCCAAGGCTACACCGTCAGCAAGTTCGCCTCTGTGCTGCCCGAGTACAT GAAAGTGTTCAAGGATGACCGCTGCAAGACCCCTTTGTCCATGCTGGCCTCCCTGATGCC TGCCTCGGCCGTGCCCGCCTTCAGGTGCCCGCCCTTGTCTCCCGCCTGCAGATCTCACAC TCAGCCGAGGCCCTCGACCTCCAGTCCCCAGAGCTGCTCGCCCTCCCCCACGGCAGGAAG GCCAGGGGTGCGGCTGCCCACTCCAGGGTGGCCGAGGGACTTGGAAAGAGACCATGGGAA CTGAAACCGCCCTCCGCTGTAGAGGCAGGAACTGTTCAAGTGCAGGGCGGTGAGACTTGG GCCGCGCTGCCGGCCACCACGCAGCTTTGGCCACACGTGGCGCTGGGCCTGTGGGTGGCT GGGCTGTGGGTGCAGCTCACAGACTTGGGGACCTGGTGCGAAAAGACGGACGGTTTCCTG CATCACCCCCTGCACGTGCGGCCTCGAATTATGTTTCTTATTGGTCAGCTTTGTTCTAGA GTGTTGGTTATTAAATCAGAAAAA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 242-360, + strand, RNAz p=0.749542 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 242-360, + strand, RNAz p=0.749542 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 93-201, gnl|bosTau2|chr4 (67250424-67250316) | |
| 93-201, gnl|canFam2|chr16 (23631029-23631143) | |
| 93-201, gnl|dasNov1|scaffold_13316 (930-1045) | |
| 93-201, gnl|galGal2|chr2 (8868615-8868743) | |
| 93-201, gnl|hg17|chr7 (157956348-157956472) | |
| 93-201, gnl|Hg17|chr7 (157956467-157956350) | |
| 93-201, gnl|loxAfr1|scaffold_119180 (4963-4848) | |
| 93-201, gnl|mm7|chr12 (114162268-114162153) | |
| 93-201, gnl|Mm7|chr12 (114162156-114162264) | |
| 93-201, gnl|monDom2|scaffold_7 (21735616-21735723) | |
| 93-201, gnl|oryCun1|scaffold_137924 (14964-15079) | |
| 93-201, gnl|panTro1|chr6 (160869587-160869711) | |
| 93-201, gnl|rheMac2|chr3 (195730339-195730463) | |
| 93-201, gnl|rn3|chr6 (143721702-143721587) | |
| 93-201, gnl|xenTro1|scaffold_376 (1047585-1047727) | |
| 202-388, gnl|bosTau2|chr4 (67244425-67244238) | |
| 202-388, gnl|canFam2|chr16 (23629207-23629345) | |
| 202-388, gnl|danRer3|chr7 (33411953-33412089) | |
| 202-388, gnl|dasNov1|scaffold_55953 (5014-4876) | |
| 202-388, gnl|echTel1|scaffold_284194 (50426-50564) | |
| 202-388, gnl|fr1|chrUn (134934869-134935016) | |
| 202-388, gnl|galGal2|chr2 (8867965-8868103) | |
| 202-388, gnl|hg17|chr7 (157954356-157954494) | |
| 202-388, gnl|Hg17|chr7 (157954533-157954355) | |
| 202-388, gnl|loxAfr1|scaffold_70112 (6582-6720) | |
| 202-388, gnl|mm7|chr12 (114166829-114166691) | |
| 202-388, gnl|Mm7|chr12 (114166650-114166826) | |
| 202-388, gnl|monDom2|scaffold_7 (21734253-21734391) | |
| 202-388, gnl|oryCun1|scaffold_137924 (12762-12884) | |
| 202-388, gnl|panTro1|chr6 (160867593-160867731) | |
| 202-388, gnl|rheMac2|chr3 (195728325-195728463) | |
| 202-388, gnl|rn3|chr6 (143724877-143724739) | |
| 202-388, gnl|xenTro1|scaffold_376 (1046360-1046498) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 93-201, gnl|bosTau2|chr4 (67250424-67250316) | |
| 93-201, gnl|canFam2|chr16 (23631029-23631143) | |
| 93-201, gnl|dasNov1|scaffold_13316 (930-1045) | |
| 93-201, gnl|galGal2|chr2 (8868615-8868743) | |
| 93-201, gnl|hg17|chr7 (157956348-157956472) | |
| 93-201, gnl|Hg17|chr7 (157956467-157956350) | |
| 93-201, gnl|loxAfr1|scaffold_119180 (4963-4848) | |
| 93-201, gnl|mm7|chr12 (114162268-114162153) | |
| 93-201, gnl|Mm7|chr12 (114162156-114162264) | |
| 93-201, gnl|monDom2|scaffold_7 (21735616-21735723) | |
| 93-201, gnl|oryCun1|scaffold_137924 (14964-15079) | |
| 93-201, gnl|panTro1|chr6 (160869587-160869711) | |
| 93-201, gnl|rheMac2|chr3 (195730339-195730463) | |
| 93-201, gnl|rn3|chr6 (143721702-143721587) | |
| 93-201, gnl|xenTro1|scaffold_376 (1047585-1047727) | |
| 202-388, gnl|bosTau2|chr4 (67244425-67244238) | |
| 202-388, gnl|canFam2|chr16 (23629207-23629345) | |
| 202-388, gnl|danRer3|chr7 (33411953-33412089) | |
| 202-388, gnl|dasNov1|scaffold_55953 (5014-4876) | |
| 202-388, gnl|echTel1|scaffold_284194 (50426-50564) | |
| 202-388, gnl|fr1|chrUn (134934869-134935016) | |
| 202-388, gnl|galGal2|chr2 (8867965-8868103) | |
| 202-388, gnl|hg17|chr7 (157954356-157954494) | |
| 202-388, gnl|Hg17|chr7 (157954533-157954355) | |
| 202-388, gnl|loxAfr1|scaffold_70112 (6582-6720) | |
| 202-388, gnl|mm7|chr12 (114166829-114166691) | |
| 202-388, gnl|Mm7|chr12 (114166650-114166826) | |
| 202-388, gnl|monDom2|scaffold_7 (21734253-21734391) | |
| 202-388, gnl|oryCun1|scaffold_137924 (12762-12884) | |
| 202-388, gnl|panTro1|chr6 (160867593-160867731) | |
| 202-388, gnl|rheMac2|chr3 (195728325-195728463) | |
| 202-388, gnl|rn3|chr6 (143724877-143724739) | |
| 202-388, gnl|xenTro1|scaffold_376 (1046360-1046498) |