Non-Coding RNA Search

Ss1.1-Mixn-0004h03.5

Sequence:


               
               GAACCTGGCCAGGGAGAGGCCCCGGTCCCTCTACATCCCGCCCGTGCACAAGGATGCGGA
CAGAGCCCAGCCCCTGCAGCCCCTGCAGCCCCTGCCCCCGCTCCCCAGCACCCGGAACGT
GTTCACAGTGAGCGCCAGCAGCACCCAGAAGACCGGGGGTGTCGCTGGCAAGTTTCCGCA
AGGCCCTTCTCCAGAAAGTCCCTCAGCGGCAAAGGGCATCAAATCGCAGGGACTGCGGTC
CCTCAAGATCTCTCCGGCCACCAGGGCACCTCTCGAAGAGGTGACCCACAGGAAAAACGG
CAGCACTTTGGAAAAGAGGAACAGTGACAGTGAGAACTACCTGACCATCCCTCTTAAGGG
AAGCTCTGCAGCTGGGGAGCTCGCGGGCAGGCCTGGGGCTGGCAGGGAGGGGCCCCCAGC
CTCCTCGGCGGCCACTCTCTGCAGCTTGCCCCCCCTGAGTGCCCGCAGCCAGGTCCCCAG
TAGCCCCAAAGGCTCTCAGGTCAGTGGAACCAGCCGGCCGGCTTGGCGCACCAAACCTGA
TAATCCCCGGGAGACGGTAGCTGCCCCCACGGGGCCACAGAGCCCCGAGCACCCCCCCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACCTGGCCAGGGAGAGGCCCCGGTCCCTCTACATCCCGCCCGTGCACAAGGATGCGGA
CAGAGCCCAGCCCCTGCAGCCCCTGCAGCCCCTGCCCCCGCTCCCCAGCACCCGGAACGT
GTTCACAGTGAGCGCCAGCAGCACCCAGAAGACCGGGGGTGTCGCTGGCAAGTTTCCGCA
AGGCCCTTCTCCAGAAAGTCCCTCAGCGGCAAAGGGCATCAAATCGCAGGGACTGCGGTC
CCTCAAGATCTCTCCGGCCACCAGGGCACCTCTCGAAGAGGTGACCCACAGGAAAAACGG
CAGCACTTTGGAAAAGAGGAACAGTGACAGTGAGAACTACCTGACCATCCCTCTTAAGGG
AAGCTCTGCAGCTGGGGAGCTCGCGGGCAGGCCTGGGGCTGGCAGGGAGGGGCCCCCAGC
CTCCTCGGCGGCCACTCTCTGCAGCTTGCCCCCCCTGAGTGCCCGCAGCCAGGTCCCCAG
TAGCCCCAAAGGCTCTCAGGTCAGTGGAACCAGCCGGCCGGCTTGGCGCACCAAACCTGA
TAATCCCCGGGAGACGGTAGCTGCCCCCACGGGGCCACAGAGCCCCGAGCACCCCCCCAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               474-600, - strand, RNAz p=0.923832

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               474-600, - strand, RNAz p=0.923832

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               491-579, - strand, RNAmicro p=0.999774
               

               
               371-490, + strand, RNAmicro p=0.962896

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               491-579, - strand, RNAmicro p=0.999774
               

               
               371-490, + strand, RNAmicro p=0.962896

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-600, gnl|bosTau2|chr6 (9285373-9284786)
               

               
               1-600, gnl|Hg17|chr4 (100928904-100928314)
               

               
               1-600, gnl|Mm7|chr3 (137877349-137877942)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-600, gnl|bosTau2|chr6 (9285373-9284786)
               

               
               1-600, gnl|Hg17|chr4 (100928904-100928314)
               

               
               1-600, gnl|Mm7|chr3 (137877349-137877942)

	491-579, - strand, RNAmicro p=0.999774
	371-490, + strand, RNAmicro p=0.962896

	1-600, gnl\|bosTau2\|chr6 (9285373-9284786)
	1-600, gnl\|Hg17\|chr4 (100928904-100928314)
	1-600, gnl\|Mm7\|chr3 (137877349-137877942)