Ss1.1-Mixn-0004h12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTTCTTTTGGTCCTCTCTCGAATCAGAAGTTCTGATTTTTCCTAAAGTGCCACAGGAAA GTCAGTGACTTACCTTCAAGGAAATTGGGCATTCGGAAAGTTGGGAGCTCCTAGGAACAT GGCGAACCTTCTGAAAACAGTGGTGACTGGCTGTTCGTGTCCTTTCCGTAGCAGTTGGGG GTCCTGTAAGGTTCTACCTGGGAAGAAGGATTTTTTACGAACATTTCATACTCATCAGGC GCTGTGGTGTAAAGCCCCTGTAAAACCAGGAATTCCATATAAGCAACTGACTGTTGGGGT CCCCAAAGAGATTTTCCAAAATGAGAAACGAGTGGCGCTGTCTCCTGCTGGCGTTCAGGC CTTGGTCAAGCAGGGTTTTAATGTTGTTGTGGAATCGGGTGCTGGTGAAGCTTCCAAGTT CTCGGATGATCACTACAGAGCAGCAGGTGCCCAGGTCCAAGGGGTGAAGGAAGTGCTGGC TTCTGATTTGGTGGTCAAAGTGCGAGCCCCTATGCTTAATCCAACATTAGGTGTTCATGA AGCTGACCTTTTAAAAACATCGGCACTTGCAACCTCATGGTTCCTAGTCGGATTTGTTTC TGCTGTGCCACGACAGGAACTCCTAAGTTGTTATTCTTTAATACTTGCAATATTTCAACC TACGTTCTTTCACTTTATAGAATTATTTATCCATTTATTTGTCTTTTTTTTTTTAAGTTA TAAGGCTGTTGTACTAGCAGCAAACCATTTTGGACGGTTTTTTACTGGTCAGATCACAGC TGCTGGAAAAGTTCCTCCTGCTAAGATTCTGATAGTTGGTGGAGGTGTCGCTGGGCTCGC TTCTGCAGGTGCAGCAAAGTCAATGGGTGCGATTGTTCGGGGATTTGACACAAGGGCTGC AGCTTTGGAGCAGTTCAAGTCTCTGGGTGCTGAGCCCTTAGAGGTAGACCTGAAGGAGTC TGGCGAGGGACAGGGAGGATATGCAAAGGAGATGTCTAAAGAGTTCATTGAGGCCGAAAT GAAACTCTTTGCCCAGCAGTGCAAGGAGGTGGACATCCTTATCAGCACGGCCCTTATTCC AGGTAAAAAAGCTCCTGTCTTATTTAATAAAGAAATGATTGAGTCCATGAAGGAAGGTTC AGTTGTTGTGGATTTAGCTGCTGAGGCTGGCGGAAACTTTGAAACCACCAAGCCGGGAGA GCTTTATGTTCATAAGGGAGTAACTCACATAGGCTACACAGACCTTCCCAGCCGCATGGC TACTCAGGCCAGCACCCTGTATTCCAACAACATCACCAAGCTCCTGAAGGCCATCAGCCC TGACAAAGATAATTTTTATTTTGAAGTGAAAGATGACTTTGACTTTGGTACGATGGGTCA TGTCATTAGAGGAACTGTAGTGATGAAGGATGGCGAAGTGATTTTCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTTCTTTTGGTCCTCTCTCGAATCAGAAGTTCTGATTTTTCCTAAAGTGCCACAGGAAA GTCAGTGACTTACCTTCAAGGAAATTGGGCATTCGGAAAGTTGGGAGCTCCTAGGAACAT GGCGAACCTTCTGAAAACAGTGGTGACTGGCTGTTCGTGTCCTTTCCGTAGCAGTTGGGG GTCCTGTAAGGTTCTACCTGGGAAGAAGGATTTTTTACGAACATTTCATACTCATCAGGC GCTGTGGTGTAAAGCCCCTGTAAAACCAGGAATTCCATATAAGCAACTGACTGTTGGGGT CCCCAAAGAGATTTTCCAAAATGAGAAACGAGTGGCGCTGTCTCCTGCTGGCGTTCAGGC CTTGGTCAAGCAGGGTTTTAATGTTGTTGTGGAATCGGGTGCTGGTGAAGCTTCCAAGTT CTCGGATGATCACTACAGAGCAGCAGGTGCCCAGGTCCAAGGGGTGAAGGAAGTGCTGGC TTCTGATTTGGTGGTCAAAGTGCGAGCCCCTATGCTTAATCCAACATTAGGTGTTCATGA AGCTGACCTTTTAAAAACATCGGCACTTGCAACCTCATGGTTCCTAGTCGGATTTGTTTC TGCTGTGCCACGACAGGAACTCCTAAGTTGTTATTCTTTAATACTTGCAATATTTCAACC TACGTTCTTTCACTTTATAGAATTATTTATCCATTTATTTGTCTTTTTTTTTTTAAGTTA TAAGGCTGTTGTACTAGCAGCAAACCATTTTGGACGGTTTTTTACTGGTCAGATCACAGC TGCTGGAAAAGTTCCTCCTGCTAAGATTCTGATAGTTGGTGGAGGTGTCGCTGGGCTCGC TTCTGCAGGTGCAGCAAAGTCAATGGGTGCGATTGTTCGGGGATTTGACACAAGGGCTGC AGCTTTGGAGCAGTTCAAGTCTCTGGGTGCTGAGCCCTTAGAGGTAGACCTGAAGGAGTC TGGCGAGGGACAGGGAGGATATGCAAAGGAGATGTCTAAAGAGTTCATTGAGGCCGAAAT GAAACTCTTTGCCCAGCAGTGCAAGGAGGTGGACATCCTTATCAGCACGGCCCTTATTCC AGGTAAAAAAGCTCCTGTCTTATTTAATAAAGAAATGATTGAGTCCATGAAGGAAGGTTC AGTTGTTGTGGATTTAGCTGCTGAGGCTGGCGGAAACTTTGAAACCACCAAGCCGGGAGA GCTTTATGTTCATAAGGGAGTAACTCACATAGGCTACACAGACCTTCCCAGCCGCATGGC TACTCAGGCCAGCACCCTGTATTCCAACAACATCACCAAGCTCCTGAAGGCCATCAGCCC TGACAAAGATAATTTTTATTTTGAAGTGAAAGATGACTTTGACTTTGGTACGATGGGTCA TGTCATTAGAGGAACTGTAGTGATGAAGGATGGCGAAGTGATTTTCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 687-805, - strand, RNAz p=0.941721 | |
| 926-1084, + strand, RNAz p=0.994165 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 687-805, - strand, RNAz p=0.941721 | |
| 926-1084, + strand, RNAz p=0.994165 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 268-501, gnl|bosTau2|chr20 (16833981-16833748) | |
| 268-501, gnl|canFam2|chr4 (69633019-69632773) | |
| 268-501, gnl|danRer3|chr21 (10526407-10526171) | |
| 268-501, gnl|dasNov1|scaffold_24841 (6882-6635) | |
| 268-501, gnl|fr1|chrUn (202282368-202282597) | |
| 268-501, gnl|galGal2|chrZ (6819176-6819422) | |
| 268-501, gnl|hg17|chr5 (43648766-43649013) | |
| 268-501, gnl|Hg17|chr5 (43648765-43648998) | |
| 268-501, gnl|loxAfr1|scaffold_61711 (744-497) | |
| 268-501, gnl|mm7|chr13 (116606076-116605830) | |
| 268-501, gnl|Mm7|chr13 (116606075-116605842) | |
| 268-501, gnl|monDom2|scaffold_20 (27103072-27102825) | |
| 268-501, gnl|oryCun1|scaffold_198254 (50871-50624) | |
| 268-501, gnl|panTro1|chr4 (72872071-72871824) | |
| 268-501, gnl|rheMac2|chr6 (43546431-43546678) | |
| 268-501, gnl|rn3|chr2 (51506723-51506477) | |
| 268-501, gnl|tetNig1|chr4 (1175185-1175420) | |
| 268-501, gnl|xenTro1|scaffold_938 (189779-190026) | |
| 630-805, gnl|bosTau2|chr20 (16826151-16825977) | |
| 630-805, gnl|Hg17|chr5 (43654785-43654978) | |
| 630-805, gnl|Mm7|chr13 (116598470-116598291) | |
| 889-1084, gnl|bosTau2|chr20 (16818291-16818096) | |
| 889-1084, gnl|canFam2|chr4 (69614800-69614577) | |
| 889-1084, gnl|danRer3|chr21 (10517045-10516843) | |
| 889-1084, gnl|dasNov1|scaffold_6387 (34525-34711) | |
| 889-1084, gnl|echTel1|scaffold_262919 (6634-6851) | |
| 889-1084, gnl|fr1|chrUn (202283723-202283926) | |
| 889-1084, gnl|galGal2|chrZ (6824653-6824871) | |
| 889-1084, gnl|hg17|chr5 (43664030-43664255) | |
| 889-1084, gnl|Hg17|chr5 (43664051-43664248) | |
| 889-1084, gnl|loxAfr1|scaffold_7147 (53907-53688) | |
| 889-1084, gnl|mm7|chr13 (116590987-116590766) | |
| 889-1084, gnl|Mm7|chr13 (116590966-116590771) | |
| 889-1084, gnl|monDom2|scaffold_20 (27087474-27087276) | |
| 889-1084, gnl|oryCun1|scaffold_198254 (35621-35396) | |
| 889-1084, gnl|panTro1|chr4 (72857145-72856920) | |
| 889-1084, gnl|rheMac2|chr6 (43560706-43560931) | |
| 889-1084, gnl|rn3|chr2 (51490288-51490067) | |
| 889-1084, gnl|tetNig1|chr4 (1176229-1176428) | |
| 889-1084, gnl|xenTro1|scaffold_938 (194694-194900) | |
| 1203-1422, gnl|bosTau2|chr20 (16799765-16799545) | |
| 1203-1422, gnl|Hg17|chr5 (43680455-43680675) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 268-501, gnl|bosTau2|chr20 (16833981-16833748) | |
| 268-501, gnl|canFam2|chr4 (69633019-69632773) | |
| 268-501, gnl|danRer3|chr21 (10526407-10526171) | |
| 268-501, gnl|dasNov1|scaffold_24841 (6882-6635) | |
| 268-501, gnl|fr1|chrUn (202282368-202282597) | |
| 268-501, gnl|galGal2|chrZ (6819176-6819422) | |
| 268-501, gnl|hg17|chr5 (43648766-43649013) | |
| 268-501, gnl|Hg17|chr5 (43648765-43648998) | |
| 268-501, gnl|loxAfr1|scaffold_61711 (744-497) | |
| 268-501, gnl|mm7|chr13 (116606076-116605830) | |
| 268-501, gnl|Mm7|chr13 (116606075-116605842) | |
| 268-501, gnl|monDom2|scaffold_20 (27103072-27102825) | |
| 268-501, gnl|oryCun1|scaffold_198254 (50871-50624) | |
| 268-501, gnl|panTro1|chr4 (72872071-72871824) | |
| 268-501, gnl|rheMac2|chr6 (43546431-43546678) | |
| 268-501, gnl|rn3|chr2 (51506723-51506477) | |
| 268-501, gnl|tetNig1|chr4 (1175185-1175420) | |
| 268-501, gnl|xenTro1|scaffold_938 (189779-190026) | |
| 630-805, gnl|bosTau2|chr20 (16826151-16825977) | |
| 630-805, gnl|Hg17|chr5 (43654785-43654978) | |
| 630-805, gnl|Mm7|chr13 (116598470-116598291) | |
| 889-1084, gnl|bosTau2|chr20 (16818291-16818096) | |
| 889-1084, gnl|canFam2|chr4 (69614800-69614577) | |
| 889-1084, gnl|danRer3|chr21 (10517045-10516843) | |
| 889-1084, gnl|dasNov1|scaffold_6387 (34525-34711) | |
| 889-1084, gnl|echTel1|scaffold_262919 (6634-6851) | |
| 889-1084, gnl|fr1|chrUn (202283723-202283926) | |
| 889-1084, gnl|galGal2|chrZ (6824653-6824871) | |
| 889-1084, gnl|hg17|chr5 (43664030-43664255) | |
| 889-1084, gnl|Hg17|chr5 (43664051-43664248) | |
| 889-1084, gnl|loxAfr1|scaffold_7147 (53907-53688) | |
| 889-1084, gnl|mm7|chr13 (116590987-116590766) | |
| 889-1084, gnl|Mm7|chr13 (116590966-116590771) | |
| 889-1084, gnl|monDom2|scaffold_20 (27087474-27087276) | |
| 889-1084, gnl|oryCun1|scaffold_198254 (35621-35396) | |
| 889-1084, gnl|panTro1|chr4 (72857145-72856920) | |
| 889-1084, gnl|rheMac2|chr6 (43560706-43560931) | |
| 889-1084, gnl|rn3|chr2 (51490288-51490067) | |
| 889-1084, gnl|tetNig1|chr4 (1176229-1176428) | |
| 889-1084, gnl|xenTro1|scaffold_938 (194694-194900) | |
| 1203-1422, gnl|bosTau2|chr20 (16799765-16799545) | |
| 1203-1422, gnl|Hg17|chr5 (43680455-43680675) |