Non-Coding RNA Search

Ss1.1-Mixn-0005c05.5

Sequence:


               
               GCGCCGGCGAGAGCTGCGAGCCCAAGCCGCCAGCGCCTGCGCCTGCCCCTGGCCCGGGCG
AGCGGAAGAAGCACCGGAGCGGCCCCGCCGACCCCCCGAAGGCGCCCCCGAAGGAGGCAG
CAGAGGACGGGAGCCCCGATCACTTTGCGCTCGTCCCCCTGACGCAGAGCCAGGGCCCCG
CCCGCGGTGGCGCCAGGACTAGTGGCTGCCGACTGGCCGTGGTCGTGCAGGAGGACCGCC
GCAAGGACAGACCCCCGGTGCCTTCGCGGGACACCAAGCTGCTCTCCCCGCTCAGGGACA
CTCCGCCCCCGCAAAGCTTGATGGTGAAGATCACCCTGGATCTCCTCTCCCGGGTCCCCC
AGCCCCCCGGGAAGGCCAGCCGCCCCAAGAAGCCGGAGGACAAACCGCCCGTGGCCGCGA
AGAAGCCCGATCCTGAGAAGCGAAGCTCAGACCCCGCCAGCAAGTTGGCCAAAAAGAGAA
AGGGCGAATCAGAAAGAGATCACGAGAGCAAGAAAACCAGACTGGAGAAGGAAATCAAAT
CACAGTCATCAGCTTCATCCTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCCGGCGAGAGCTGCGAGCCCAAGCCGCCAGCGCCTGCGCCTGCCCCTGGCCCGGGCG
AGCGGAAGAAGCACCGGAGCGGCCCCGCCGACCCCCCGAAGGCGCCCCCGAAGGAGGCAG
CAGAGGACGGGAGCCCCGATCACTTTGCGCTCGTCCCCCTGACGCAGAGCCAGGGCCCCG
CCCGCGGTGGCGCCAGGACTAGTGGCTGCCGACTGGCCGTGGTCGTGCAGGAGGACCGCC
GCAAGGACAGACCCCCGGTGCCTTCGCGGGACACCAAGCTGCTCTCCCCGCTCAGGGACA
CTCCGCCCCCGCAAAGCTTGATGGTGAAGATCACCCTGGATCTCCTCTCCCGGGTCCCCC
AGCCCCCCGGGAAGGCCAGCCGCCCCAAGAAGCCGGAGGACAAACCGCCCGTGGCCGCGA
AGAAGCCCGATCCTGAGAAGCGAAGCTCAGACCCCGCCAGCAAGTTGGCCAAAAAGAGAA
AGGGCGAATCAGAAAGAGATCACGAGAGCAAGAAAACCAGACTGGAGAAGGAAATCAAAT
CACAGTCATCAGCTTCATCCTCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               262-381, - strand, RNAz p=0.506091

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               262-381, - strand, RNAz p=0.506091

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               207-328, + strand, RNAmicro p=0.99719

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               207-328, + strand, RNAmicro p=0.99719

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               25-483, gnl|bosTau2|chr6 (58193964-58193496)
               

               
               25-483, gnl|Hg17|chr4 (88393151-88393631)
               

               
               25-483, gnl|Mm7|chr5 (103023226-103023763)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-483, gnl|bosTau2|chr6 (58193964-58193496)
               

               
               25-483, gnl|Hg17|chr4 (88393151-88393631)
               

               
               25-483, gnl|Mm7|chr5 (103023226-103023763)

	25-483, gnl\|bosTau2\|chr6 (58193964-58193496)
	25-483, gnl\|Hg17\|chr4 (88393151-88393631)
	25-483, gnl\|Mm7\|chr5 (103023226-103023763)