Ss1.1-Mixn-0005f01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCACAGGAGGGACGTCGGCAGCTTGGCGCTGGAGGGGCCCTGGGCGGCCCACTCGTCCTT CAGGAACTCCTCCTCGTCCTCTGAGTCCGTATTGTAGGAGTAGCTGCTCACTTCCGAGGC GAACGGGGAGTGGGCGGACTTGGGCTGGCCTCTGGCCTTGAAGCCCACCTCCATCTTCCT GGCTTTGGCGGCCCTTTTGTGTTTACCTTCTCGGGACGCTTTCAGAGACAGGCTGAGGCC CTTGGCCAGCGCCTTCCGGTCCTTGCCCAGCAGGCTGTCGTAGGGCGTCAAGTACCTGCC GCAGCCCCCGCTCGTTTTTGACTTCCCTCCAGAACTGTCCGAGAACTTCAAGGGTGACTT CAACTTGTCCTGCTTTGTGAGGGAGAGGGCTTTGTCCAGCTTGCTTGCCAACTGCTCCTG GTCGCTGGCCATCTTCTTCTTCTTAATCTTTAGATGACTCATGAAGTCCGACGAGGCCTC ATGCTCGTCCCAAGGCTGGCTCCTCCCCCGAGCTTTGCCCGTTCCCCCGAGGGCATCAGG GTCTTCCTCGGGCGCCTTGTGTCTCTTCCTCACCCCCGCTCCCAGCTCGTAATCGTCCGA GGTCAGCAGGGGCTTGCTGCTCAGCTCGGCATCGCGGCGCCTCTGCAGCTTCACCAGCTC GCGCTGCTTCTCCTTGTACTGCCGCTGCACCTCGGCCAGCCGCATGCGGAAGTCCAGCTC CATGGCGTCCATGCTCTCCAGCGAGGACTTCATCGCGTACATCCGCTCATCCTTCTTCTG CATCCAGCTGTACTTCTTGTTGGGGTTCAGCTCCCGCGGAAGCCGCAGGTTCTTGAGCGG ATCCACGAAGGGGCCGTCCAGCACCTCCTTCAGCATGTGGCTGCTGGCCGCCAGCAGGCT CTCCAGCGACGGCCGCACCACCGGGCCCCGCTCGGCACTGGCACCTGCACCTGCCACCTC CTGGCTCCTCTTCTCCAGCTCCAGCTCGGCGATCTCGCTCAGCAGGGTGATCCCATGCAG GAAGCTCTGCTCCAGGACCAGGCTCTGCGCTGCCTCCAGCTTCTCCAGGGCCTGGCCTCC AGTGCCCGGGGAGGGCAGAGGCCTGGCCTGGGGTAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCACAGGAGGGACGTCGGCAGCTTGGCGCTGGAGGGGCCCTGGGCGGCCCACTCGTCCTT CAGGAACTCCTCCTCGTCCTCTGAGTCCGTATTGTAGGAGTAGCTGCTCACTTCCGAGGC GAACGGGGAGTGGGCGGACTTGGGCTGGCCTCTGGCCTTGAAGCCCACCTCCATCTTCCT GGCTTTGGCGGCCCTTTTGTGTTTACCTTCTCGGGACGCTTTCAGAGACAGGCTGAGGCC CTTGGCCAGCGCCTTCCGGTCCTTGCCCAGCAGGCTGTCGTAGGGCGTCAAGTACCTGCC GCAGCCCCCGCTCGTTTTTGACTTCCCTCCAGAACTGTCCGAGAACTTCAAGGGTGACTT CAACTTGTCCTGCTTTGTGAGGGAGAGGGCTTTGTCCAGCTTGCTTGCCAACTGCTCCTG GTCGCTGGCCATCTTCTTCTTCTTAATCTTTAGATGACTCATGAAGTCCGACGAGGCCTC ATGCTCGTCCCAAGGCTGGCTCCTCCCCCGAGCTTTGCCCGTTCCCCCGAGGGCATCAGG GTCTTCCTCGGGCGCCTTGTGTCTCTTCCTCACCCCCGCTCCCAGCTCGTAATCGTCCGA GGTCAGCAGGGGCTTGCTGCTCAGCTCGGCATCGCGGCGCCTCTGCAGCTTCACCAGCTC GCGCTGCTTCTCCTTGTACTGCCGCTGCACCTCGGCCAGCCGCATGCGGAAGTCCAGCTC CATGGCGTCCATGCTCTCCAGCGAGGACTTCATCGCGTACATCCGCTCATCCTTCTTCTG CATCCAGCTGTACTTCTTGTTGGGGTTCAGCTCCCGCGGAAGCCGCAGGTTCTTGAGCGG ATCCACGAAGGGGCCGTCCAGCACCTCCTTCAGCATGTGGCTGCTGGCCGCCAGCAGGCT CTCCAGCGACGGCCGCACCACCGGGCCCCGCTCGGCACTGGCACCTGCACCTGCCACCTC CTGGCTCCTCTTCTCCAGCTCCAGCTCGGCGATCTCGCTCAGCAGGGTGATCCCATGCAG GAAGCTCTGCTCCAGGACCAGGCTCTGCGCTGCCTCCAGCTTCTCCAGGGCCTGGCCTCC AGTGCCCGGGGAGGGCAGAGGCCTGGCCTGGGGTAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 129-878, + strand, RNAz p=0.964847 | |
| 948-1066, - strand, RNAz p=0.543191 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 129-878, + strand, RNAz p=0.964847 | |
| 948-1066, - strand, RNAz p=0.543191 |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 90-456, gnl|bosTau2|chr25 (37221849-37221483) | |
| 90-456, gnl|Hg17|chr7 (5169785-5170151) | |
| 90-456, gnl|Mm7|chr5 (141789962-141790328) | |
| 760-938, gnl|bosTau2|chr25 (37217590-37217412) | |
| 760-938, gnl|canFam2|chr6 (15573576-15573390) | |
| 760-938, gnl|danRer3|chr3 (37451103-37451239) | |
| 760-938, gnl|dasNov1|scaffold_50579 (5975-5795) | |
| 760-938, gnl|echTel1|scaffold_252266 (8607-8789) | |
| 760-938, gnl|fr1|chrUn (208109104-208108963) | |
| 760-938, gnl|galGal2|chr14 (6253493-6253654) | |
| 760-938, gnl|hg17|chr7 (5175487-5175666) | |
| 760-938, gnl|Hg17|chr7 (5175519-5175697) | |
| 760-938, gnl|loxAfr1|scaffold_15564 (5881-5712) | |
| 760-938, gnl|mm7|chr5 (141796298-141796479) | |
| 760-938, gnl|Mm7|chr5 (141796332-141796510) | |
| 760-938, gnl|monDom2|scaffold_17 (5176403-5176560) | |
| 760-938, gnl|oryCun1|scaffold_122726 (4568-4747) | |
| 760-938, gnl|panTro1|chr6 (5598936-5599115) | |
| 760-938, gnl|rheMac2|chr3 (43641342-43641163) | |
| 760-938, gnl|rn3|chr12 (12226465-12226284) | |
| 760-938, gnl|tetNig1|chrUn_random (38856185-38856322) | |
| 948-1116, gnl|bosTau2|chr25 (37210994-37210826) | |
| 948-1116, gnl|canFam2|chr6 (15568712-15568467) | |
| 948-1116, gnl|canFam2|chr6 (15568710-15568450) | |
| 948-1116, gnl|danRer3|chr3 (37451679-37451919) | |
| 948-1116, gnl|danRer3|chr3 (37451700-37451922) | |
| 948-1116, gnl|echTel1|scaffold_172991 (671-916) | |
| 948-1116, gnl|echTel1|scaffold_172991 (678-933) | |
| 948-1116, gnl|fr1|chrUn (208108794-208108569) | |
| 948-1116, gnl|fr1|chrUn (208108809-208108566) | |
| 948-1116, gnl|galGal2|chr14 (6254300-6254554) | |
| 948-1116, gnl|galGal2|chr14 (6254295-6254571) | |
| 948-1116, gnl|hg17|chr4 (141921976-141922230) | |
| 948-1116, gnl|hg17|chr7 (5183243-5183491) | |
| 948-1116, gnl|Hg17|chr7 (5183244-5183415) | |
| 948-1116, gnl|mm7|chr5 (141801723-141801968) | |
| 948-1116, gnl|mm7|chr5 (141801725-141801985) | |
| 948-1116, gnl|Mm7|chr5 (141801724-141801892) | |
| 948-1116, gnl|monDom2|scaffold_17 (5180045-5180299) | |
| 948-1116, gnl|monDom2|scaffold_17 (5180047-5180316) | |
| 948-1116, gnl|oryCun1|scaffold_196196 (108-356) | |
| 948-1116, gnl|oryCun1|scaffold_196196 (110-373) | |
| 948-1116, gnl|panTro1|chr3 (159182697-159182962) | |
| 948-1116, gnl|panTro1|chr6 (5606685-5606933) | |
| 948-1116, gnl|rheMac2|chr3 (43633974-43633729) | |
| 948-1116, gnl|rheMac2|chr5 (133096292-133096556) | |
| 948-1116, gnl|rn3|chr12 (12220384-12220139) | |
| 948-1116, gnl|rn3|chr12 (12220382-12220125) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 90-456, gnl|bosTau2|chr25 (37221849-37221483) | |
| 90-456, gnl|Hg17|chr7 (5169785-5170151) | |
| 90-456, gnl|Mm7|chr5 (141789962-141790328) | |
| 760-938, gnl|bosTau2|chr25 (37217590-37217412) | |
| 760-938, gnl|canFam2|chr6 (15573576-15573390) | |
| 760-938, gnl|danRer3|chr3 (37451103-37451239) | |
| 760-938, gnl|dasNov1|scaffold_50579 (5975-5795) | |
| 760-938, gnl|echTel1|scaffold_252266 (8607-8789) | |
| 760-938, gnl|fr1|chrUn (208109104-208108963) | |
| 760-938, gnl|galGal2|chr14 (6253493-6253654) | |
| 760-938, gnl|hg17|chr7 (5175487-5175666) | |
| 760-938, gnl|Hg17|chr7 (5175519-5175697) | |
| 760-938, gnl|loxAfr1|scaffold_15564 (5881-5712) | |
| 760-938, gnl|mm7|chr5 (141796298-141796479) | |
| 760-938, gnl|Mm7|chr5 (141796332-141796510) | |
| 760-938, gnl|monDom2|scaffold_17 (5176403-5176560) | |
| 760-938, gnl|oryCun1|scaffold_122726 (4568-4747) | |
| 760-938, gnl|panTro1|chr6 (5598936-5599115) | |
| 760-938, gnl|rheMac2|chr3 (43641342-43641163) | |
| 760-938, gnl|rn3|chr12 (12226465-12226284) | |
| 760-938, gnl|tetNig1|chrUn_random (38856185-38856322) | |
| 948-1116, gnl|bosTau2|chr25 (37210994-37210826) | |
| 948-1116, gnl|canFam2|chr6 (15568712-15568467) | |
| 948-1116, gnl|canFam2|chr6 (15568710-15568450) | |
| 948-1116, gnl|danRer3|chr3 (37451679-37451919) | |
| 948-1116, gnl|danRer3|chr3 (37451700-37451922) | |
| 948-1116, gnl|echTel1|scaffold_172991 (671-916) | |
| 948-1116, gnl|echTel1|scaffold_172991 (678-933) | |
| 948-1116, gnl|fr1|chrUn (208108794-208108569) | |
| 948-1116, gnl|fr1|chrUn (208108809-208108566) | |
| 948-1116, gnl|galGal2|chr14 (6254300-6254554) | |
| 948-1116, gnl|galGal2|chr14 (6254295-6254571) | |
| 948-1116, gnl|hg17|chr4 (141921976-141922230) | |
| 948-1116, gnl|hg17|chr7 (5183243-5183491) | |
| 948-1116, gnl|Hg17|chr7 (5183244-5183415) | |
| 948-1116, gnl|mm7|chr5 (141801723-141801968) | |
| 948-1116, gnl|mm7|chr5 (141801725-141801985) | |
| 948-1116, gnl|Mm7|chr5 (141801724-141801892) | |
| 948-1116, gnl|monDom2|scaffold_17 (5180045-5180299) | |
| 948-1116, gnl|monDom2|scaffold_17 (5180047-5180316) | |
| 948-1116, gnl|oryCun1|scaffold_196196 (108-356) | |
| 948-1116, gnl|oryCun1|scaffold_196196 (110-373) | |
| 948-1116, gnl|panTro1|chr3 (159182697-159182962) | |
| 948-1116, gnl|panTro1|chr6 (5606685-5606933) | |
| 948-1116, gnl|rheMac2|chr3 (43633974-43633729) | |
| 948-1116, gnl|rheMac2|chr5 (133096292-133096556) | |
| 948-1116, gnl|rn3|chr12 (12220384-12220139) | |
| 948-1116, gnl|rn3|chr12 (12220382-12220125) |