Non-Coding RNA Search

Ss1.1-Mixn-0005m03.5

Sequence:


               
               AGTTGTCTATAAAACTCTAGTGTAAATATAGCAGTCCCCTCCCTCATCTTTTCTTCTATC
TCACTCCCCATTTATTCTACACCGGTTGTATTTTTAATTTAGGACTTCCCCTTTTGAGCA
TGGAAGCTCAGAGGTGGGGTACCAGCCAGAGCTTGGCCGAGTGAGGAAGGAAAACAGAAA
GGTGACGATTCTCTAACTCACCGTTTTTGTTTTTCATAATATCGGCCAGCTGTTTGTACA
GACAGCCTGTGAGTTGTAAATAAAGCAGAGTGGGCTAAAAAAAAAAGGGGGGGCCCTTTT
AAATTTTCCTTGGGGGGCCCAAATTTTACCCCTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTGTCTATAAAACTCTAGTGTAAATATAGCAGTCCCCTCCCTCATCTTTTCTTCTATC
TCACTCCCCATTTATTCTACACCGGTTGTATTTTTAATTTAGGACTTCCCCTTTTGAGCA
TGGAAGCTCAGAGGTGGGGTACCAGCCAGAGCTTGGCCGAGTGAGGAAGGAAAACAGAAA
GGTGACGATTCTCTAACTCACCGTTTTTGTTTTTCATAATATCGGCCAGCTGTTTGTACA
GACAGCCTGTGAGTTGTAAATAAAGCAGAGTGGGCTAAAAAAAAAAGGGGGGGCCCTTTT
AAATTTTCCTTGGGGGGCCCAAATTTTACCCCTCCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               15-199, - strand, RNAz p=0.941722
               

               
               39-273, - strand, RNAz p=0.906089

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               15-199, - strand, RNAz p=0.941722
               

               
               39-273, - strand, RNAz p=0.906089

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               138-254, + strand, RNAmicro p=0.998724

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               138-254, + strand, RNAmicro p=0.998724

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-276, gnl|bosTau2|chr19 (20491777-20491510)
               

               
               1-276, gnl|canFam2|chr5 (35199216-35199592)
               

               
               1-276, gnl|dasNov1|scaffold_20816 (5234-5598)
               

               
               1-276, gnl|echTel1|scaffold_214456 (2189-2539)
               

               
               1-276, gnl|hg17|chr17 (7079065-7079443)
               

               
               1-276, gnl|Hg17|chr17 (7079359-7079085)
               

               
               1-276, gnl|mm7|chr11 (70081591-70081231)
               

               
               1-276, gnl|Mm7|chr11 (70081312-70081570)
               

               
               1-276, gnl|monDom2|scaffold_0 (23370501-23370147)
               

               
               1-276, gnl|panTro1|chr19_random (44674195-44673817)
               

               
               1-276, gnl|rheMac2|chr16 (6964667-6965047)
               

               
               1-276, gnl|rn3|chr10 (56859779-56859412)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-276, gnl|bosTau2|chr19 (20491777-20491510)
               

               
               1-276, gnl|canFam2|chr5 (35199216-35199592)
               

               
               1-276, gnl|dasNov1|scaffold_20816 (5234-5598)
               

               
               1-276, gnl|echTel1|scaffold_214456 (2189-2539)
               

               
               1-276, gnl|hg17|chr17 (7079065-7079443)
               

               
               1-276, gnl|Hg17|chr17 (7079359-7079085)
               

               
               1-276, gnl|mm7|chr11 (70081591-70081231)
               

               
               1-276, gnl|Mm7|chr11 (70081312-70081570)
               

               
               1-276, gnl|monDom2|scaffold_0 (23370501-23370147)
               

               
               1-276, gnl|panTro1|chr19_random (44674195-44673817)
               

               
               1-276, gnl|rheMac2|chr16 (6964667-6965047)
               

               
               1-276, gnl|rn3|chr10 (56859779-56859412)

	15-199, - strand, RNAz p=0.941722
	39-273, - strand, RNAz p=0.906089

	1-276, gnl\|bosTau2\|chr19 (20491777-20491510)
	1-276, gnl\|canFam2\|chr5 (35199216-35199592)
	1-276, gnl\|dasNov1\|scaffold_20816 (5234-5598)
	1-276, gnl\|echTel1\|scaffold_214456 (2189-2539)
	1-276, gnl\|hg17\|chr17 (7079065-7079443)
	1-276, gnl\|Hg17\|chr17 (7079359-7079085)
	1-276, gnl\|mm7\|chr11 (70081591-70081231)
	1-276, gnl\|Mm7\|chr11 (70081312-70081570)
	1-276, gnl\|monDom2\|scaffold_0 (23370501-23370147)
	1-276, gnl\|panTro1\|chr19_random (44674195-44673817)
	1-276, gnl\|rheMac2\|chr16 (6964667-6965047)
	1-276, gnl\|rn3\|chr10 (56859779-56859412)