Ss1.1-Mixn-0006g21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTGGCGTCCGTGCGTCCAGCGGGCCGCCTCACAGGTCATGGAGCCGCGCGCGGGGGGCG CCACAGACCCTAGGGGGAGCGGAGGAGGCGGTGGCCTTCCTCCGCGCGCGGGCCCCAGCG CCCGGGAGCGGCTGGCGCGGCTGGACGCGCGCCCCCTGGCGGCCCGAGCTGCGGCGGACG TGGCGGCGCTGCCATTAGCGTGCTGGATTCGGCGGACATAGAGGTCACGGACAGTCGCCT TCCTTCGGCCCCAGCATCGTCGGTCAGAGACTTTGGGTACGCGTACGGCGCCAGCACTTC CCCGCTTCAGCACCCTCGACCCCGTACGACTCCCCAAACCCGGGGCAGCGCGGAGCTTAG CCCAGCAGGAGCAGCCGACGGCCCCGCGGATCCTCCGCTTGAGCGCTGCACGGAGGACCC AGAAGACCAAACCCCAGATTCCCCCGGACCCTGGCTGGTGCCGAGCGAGGAACGGCTCTC GCGGGCCCTAGGGGTCCCGGGGGCAGCGCAGTTCGCCCTTGAGATGGCAGCCGGAAGGCG GAGGCACTGAGCGTGCATCAGACGGCTTACTTTGGTAGTGCCCATCCCGGATTGTAGCGC GCTCTGCCCATGCCTATTAGCATTGCGCGGAGAGCTTCCAGTTGGTCTGGGCTTCCAGCA GCTCAGTCGAACAAGCCCGGGCTCCCCTCGCGCCGTCAGTGGGATGGCCCTTCTGGACGG GCTCGCCCTGCACTTCTAGATTGGGGGGGGGGGAGATAATTAAATGGTTCCGGCCCCTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTGGCGTCCGTGCGTCCAGCGGGCCGCCTCACAGGTCATGGAGCCGCGCGCGGGGGGCG CCACAGACCCTAGGGGGAGCGGAGGAGGCGGTGGCCTTCCTCCGCGCGCGGGCCCCAGCG CCCGGGAGCGGCTGGCGCGGCTGGACGCGCGCCCCCTGGCGGCCCGAGCTGCGGCGGACG TGGCGGCGCTGCCATTAGCGTGCTGGATTCGGCGGACATAGAGGTCACGGACAGTCGCCT TCCTTCGGCCCCAGCATCGTCGGTCAGAGACTTTGGGTACGCGTACGGCGCCAGCACTTC CCCGCTTCAGCACCCTCGACCCCGTACGACTCCCCAAACCCGGGGCAGCGCGGAGCTTAG CCCAGCAGGAGCAGCCGACGGCCCCGCGGATCCTCCGCTTGAGCGCTGCACGGAGGACCC AGAAGACCAAACCCCAGATTCCCCCGGACCCTGGCTGGTGCCGAGCGAGGAACGGCTCTC GCGGGCCCTAGGGGTCCCGGGGGCAGCGCAGTTCGCCCTTGAGATGGCAGCCGGAAGGCG GAGGCACTGAGCGTGCATCAGACGGCTTACTTTGGTAGTGCCCATCCCGGATTGTAGCGC GCTCTGCCCATGCCTATTAGCATTGCGCGGAGAGCTTCCAGTTGGTCTGGGCTTCCAGCA GCTCAGTCGAACAAGCCCGGGCTCCCCTCGCGCCGTCAGTGGGATGGCCCTTCTGGACGG GCTCGCCCTGCACTTCTAGATTGGGGGGGGGGGAGATAATTAAATGGTTCCGGCCCCTTC |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 376-495, - strand, RNAz p=0.656158 | |
| 401-517, + strand, RNAz p=0.602916 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 376-495, - strand, RNAz p=0.656158 | |
| 401-517, + strand, RNAz p=0.602916 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 349-467, - strand, RNAmicro p=0.909083 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 86-191, gnl|bosTau2|chrX (26090712-26090607) | |
| 86-191, gnl|canFam2|chrX (42216230-42216667) | |
| 86-191, gnl|canFam2|chrX (42218922-42219359) | |
| 86-191, gnl|dasNov1|scaffold_49907 (4019-3567) | |
| 86-191, gnl|dasNov1|scaffold_49907 (3567-4019) | |
| 86-191, gnl|echTel1|scaffold_323481 (43152-42653) | |
| 86-191, gnl|echTel1|scaffold_323481 (42653-43152) | |
| 86-191, gnl|hg17|chrX (48768827-48769270) | |
| 86-191, gnl|hg17|chrX (48776388-48776824) | |
| 86-191, gnl|Hg17|chrX (48776490-48776595) | |
| 86-191, gnl|loxAfr1|scaffold_154231 (4686-4253) | |
| 86-191, gnl|loxAfr1|scaffold_154231 (4253-4686) | |
| 86-191, gnl|mm7|chrX (6112919-6113305) | |
| 86-191, gnl|mm7|chrX (6113305-6112919) | |
| 86-191, gnl|Mm7|chrX (6113198-6113093) | |
| 86-191, gnl|oryCun1|scaffold_42058 (1512-1068) | |
| 86-191, gnl|oryCun1|scaffold_42058 (1068-1512) | |
| 86-191, gnl|panTro1|chrX (50093304-50093736) | |
| 86-191, gnl|panTro1|chrX (50093736-50093304) | |
| 86-191, gnl|rheMac2|chrX (47008437-47008870) | |
| 86-191, gnl|rheMac2|chrX (47016762-47017197) | |
| 86-191, gnl|rn3|chrX (26919892-26919504) | |
| 86-191, gnl|rn3|chrX (26919504-26919907) | |
| 288-648, gnl|bosTau2|chrX (26088308-26087947) | |
| 288-648, gnl|echTel1|scaffold_323481 (46563-47312) | |
| 288-648, gnl|hg17|chrX (48778716-48779466) | |
| 288-648, gnl|Hg17|chrX (48778844-48779213) | |
| 288-648, gnl|loxAfr1|scaffold_77565 (310-1032) | |
| 288-648, gnl|mm7|chrX (6108425-6107642) | |
| 288-648, gnl|Mm7|chrX (6108299-6107949) | |
| 288-648, gnl|oryCun1|scaffold_194299 (5125-4379) | |
| 288-648, gnl|panTro1|chrX (50103071-50103821) | |
| 288-648, gnl|rheMac2|chrX (47019120-47019875) | |
| 288-648, gnl|rn3|chrX (26924728-26925506) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 86-191, gnl|bosTau2|chrX (26090712-26090607) | |
| 86-191, gnl|canFam2|chrX (42216230-42216667) | |
| 86-191, gnl|canFam2|chrX (42218922-42219359) | |
| 86-191, gnl|dasNov1|scaffold_49907 (4019-3567) | |
| 86-191, gnl|dasNov1|scaffold_49907 (3567-4019) | |
| 86-191, gnl|echTel1|scaffold_323481 (43152-42653) | |
| 86-191, gnl|echTel1|scaffold_323481 (42653-43152) | |
| 86-191, gnl|hg17|chrX (48768827-48769270) | |
| 86-191, gnl|hg17|chrX (48776388-48776824) | |
| 86-191, gnl|Hg17|chrX (48776490-48776595) | |
| 86-191, gnl|loxAfr1|scaffold_154231 (4686-4253) | |
| 86-191, gnl|loxAfr1|scaffold_154231 (4253-4686) | |
| 86-191, gnl|mm7|chrX (6112919-6113305) | |
| 86-191, gnl|mm7|chrX (6113305-6112919) | |
| 86-191, gnl|Mm7|chrX (6113198-6113093) | |
| 86-191, gnl|oryCun1|scaffold_42058 (1512-1068) | |
| 86-191, gnl|oryCun1|scaffold_42058 (1068-1512) | |
| 86-191, gnl|panTro1|chrX (50093304-50093736) | |
| 86-191, gnl|panTro1|chrX (50093736-50093304) | |
| 86-191, gnl|rheMac2|chrX (47008437-47008870) | |
| 86-191, gnl|rheMac2|chrX (47016762-47017197) | |
| 86-191, gnl|rn3|chrX (26919892-26919504) | |
| 86-191, gnl|rn3|chrX (26919504-26919907) | |
| 288-648, gnl|bosTau2|chrX (26088308-26087947) | |
| 288-648, gnl|echTel1|scaffold_323481 (46563-47312) | |
| 288-648, gnl|hg17|chrX (48778716-48779466) | |
| 288-648, gnl|Hg17|chrX (48778844-48779213) | |
| 288-648, gnl|loxAfr1|scaffold_77565 (310-1032) | |
| 288-648, gnl|mm7|chrX (6108425-6107642) | |
| 288-648, gnl|Mm7|chrX (6108299-6107949) | |
| 288-648, gnl|oryCun1|scaffold_194299 (5125-4379) | |
| 288-648, gnl|panTro1|chrX (50103071-50103821) | |
| 288-648, gnl|rheMac2|chrX (47019120-47019875) | |
| 288-648, gnl|rn3|chrX (26924728-26925506) |