Non-Coding RNA Search

Ss1.1-Mixn-0007d03.5

Sequence:


               
               CCTAGAAGGCGGGTTCGCGCAAGCGCCGCGCCTGGGCTTGAGGATTCCGGAAATGTGACT
CTGAAAAATGAGATGGAGAAGTACGAGCGGATCCGAGTGGTGGGGAGAGGTGCCTTCGGG
ATTGTTCATCTGTGCCTGCGCAAGGCTGACCAGAAGCTGGTGATCATCAAGCAGATCCCG
GTGGAGCAGATGACCAAGGAAGAGCGGCAGGCAGCCCAGAATGAGTGCCAGGTCCTCAAG
CTGCTCAACCACCCCAATGTCATTGAGTACTATGAGAACTTCCTGGAGGACAAGGCCCTC
ATGATCGCCATGGAATATGCACCAGGCGGCACGCTGGCTGAGTTCATCCAGAAGCGCTGC
AACTCCCTGCTGGAGGAGGAGACCATCCTGCACTTCTTTGTGCAGATCCTGCTGGCGCTG
CATCATGTGCACACCCACCTCATCCTGCACCGGGACCTCAAGACCCAAAACATCCTTCTA
GACAAACACCGCATGGTCGTCAAGATCGGTGACTTTGGCATCTCCAAGATCCTTAGCAGC
AAGAGCAAGGCCTACACGGTGGTGGGTACTCCATGCTACATCTCCCCCGAACTGTGTGAG
GGCAAGCCCTACAACCAGAAGATTGACATCTGGGCCCTGGGCTGTGTCCTCTATGAGCTG
GCCAGCCTCAAGAGGGCCTTTGAGGCTGCGAACCTGCCAGCGCTGGTGCTGAAGATCATG
AGTGGCACCTTTGCGCCCATCTCCGACCGGTACAGCCCTGAGCTGCGCCAGCTGGTTCTC
AGTCTGCTCAGCCTGGAGCCCGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTAGAAGGCGGGTTCGCGCAAGCGCCGCGCCTGGGCTTGAGGATTCCGGAAATGTGACT
CTGAAAAATGAGATGGAGAAGTACGAGCGGATCCGAGTGGTGGGGAGAGGTGCCTTCGGG
ATTGTTCATCTGTGCCTGCGCAAGGCTGACCAGAAGCTGGTGATCATCAAGCAGATCCCG
GTGGAGCAGATGACCAAGGAAGAGCGGCAGGCAGCCCAGAATGAGTGCCAGGTCCTCAAG
CTGCTCAACCACCCCAATGTCATTGAGTACTATGAGAACTTCCTGGAGGACAAGGCCCTC
ATGATCGCCATGGAATATGCACCAGGCGGCACGCTGGCTGAGTTCATCCAGAAGCGCTGC
AACTCCCTGCTGGAGGAGGAGACCATCCTGCACTTCTTTGTGCAGATCCTGCTGGCGCTG
CATCATGTGCACACCCACCTCATCCTGCACCGGGACCTCAAGACCCAAAACATCCTTCTA
GACAAACACCGCATGGTCGTCAAGATCGGTGACTTTGGCATCTCCAAGATCCTTAGCAGC
AAGAGCAAGGCCTACACGGTGGTGGGTACTCCATGCTACATCTCCCCCGAACTGTGTGAG
GGCAAGCCCTACAACCAGAAGATTGACATCTGGGCCCTGGGCTGTGTCCTCTATGAGCTG
GCCAGCCTCAAGAGGGCCTTTGAGGCTGCGAACCTGCCAGCGCTGGTGCTGAAGATCATG
AGTGGCACCTTTGCGCCCATCTCCGACCGGTACAGCCCTGAGCTGCGCCAGCTGGTTCTC
AGTCTGCTCAGCCTGGAGCCCGCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12852471|dbj|BAB29424.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12852471|dbj|BAB29424.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               362-481, - strand, RNAz p=0.810301

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               362-481, - strand, RNAz p=0.810301

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               323-561, gnl|bosTau2|chr19 (13697026-13697264)
               

               
               323-561, gnl|Hg17|chr17 (24085914-24086152)
               

               
               323-561, gnl|Mm7|chr11 (78254261-78254023)
               


               
               690-803, gnl|bosTau2|chr19 (13698086-13698199)
               

               
               690-803, gnl|canFam2|chr9 (46253363-46253559)
               

               
               690-803, gnl|danRer3|chr4 (13580494-13580690)
               

               
               690-803, gnl|dasNov1|scaffold_5542 (47138-46942)
               

               
               690-803, gnl|echTel1|scaffold_317923 (168557-168753)
               

               
               690-803, gnl|fr1|chrUn (15562442-15562629)
               

               
               690-803, gnl|galGal2|chr19 (5433769-5433965)
               

               
               690-803, gnl|hg17|chr17 (24088441-24088637)
               

               
               690-803, gnl|Hg17|chr17 (24088450-24088563)
               

               
               690-803, gnl|mm7|chr11 (78252885-78252689)
               

               
               690-803, gnl|Mm7|chr11 (78252874-78252761)
               

               
               690-803, gnl|monDom2|scaffold_44 (14687392-14687588)
               

               
               690-803, gnl|oryCun1|scaffold_211086 (39546-39352)
               

               
               690-803, gnl|panTro1|chr19_random (12909766-12909600)
               

               
               690-803, gnl|rheMac2|chr16 (23940424-23940620)
               

               
               690-803, gnl|rn3|chr10 (64478044-64478238)
               

               
               690-803, gnl|tetNig1|chr16 (3972670-3972478)
               

               
               690-803, gnl|xenTro1|scaffold_50 (1137792-1137596)

Aligned organism(s): 21 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               323-561, gnl|bosTau2|chr19 (13697026-13697264)
               

               
               323-561, gnl|Hg17|chr17 (24085914-24086152)
               

               
               323-561, gnl|Mm7|chr11 (78254261-78254023)
               


               
               690-803, gnl|bosTau2|chr19 (13698086-13698199)
               

               
               690-803, gnl|canFam2|chr9 (46253363-46253559)
               

               
               690-803, gnl|danRer3|chr4 (13580494-13580690)
               

               
               690-803, gnl|dasNov1|scaffold_5542 (47138-46942)
               

               
               690-803, gnl|echTel1|scaffold_317923 (168557-168753)
               

               
               690-803, gnl|fr1|chrUn (15562442-15562629)
               

               
               690-803, gnl|galGal2|chr19 (5433769-5433965)
               

               
               690-803, gnl|hg17|chr17 (24088441-24088637)
               

               
               690-803, gnl|Hg17|chr17 (24088450-24088563)
               

               
               690-803, gnl|mm7|chr11 (78252885-78252689)
               

               
               690-803, gnl|Mm7|chr11 (78252874-78252761)
               

               
               690-803, gnl|monDom2|scaffold_44 (14687392-14687588)
               

               
               690-803, gnl|oryCun1|scaffold_211086 (39546-39352)
               

               
               690-803, gnl|panTro1|chr19_random (12909766-12909600)
               

               
               690-803, gnl|rheMac2|chr16 (23940424-23940620)
               

               
               690-803, gnl|rn3|chr10 (64478044-64478238)
               

               
               690-803, gnl|tetNig1|chr16 (3972670-3972478)
               

               
               690-803, gnl|xenTro1|scaffold_50 (1137792-1137596)

	323-561, gnl\|bosTau2\|chr19 (13697026-13697264)
	323-561, gnl\|Hg17\|chr17 (24085914-24086152)
	323-561, gnl\|Mm7\|chr11 (78254261-78254023)

	690-803, gnl\|bosTau2\|chr19 (13698086-13698199)
	690-803, gnl\|canFam2\|chr9 (46253363-46253559)
	690-803, gnl\|danRer3\|chr4 (13580494-13580690)
	690-803, gnl\|dasNov1\|scaffold_5542 (47138-46942)
	690-803, gnl\|echTel1\|scaffold_317923 (168557-168753)
	690-803, gnl\|fr1\|chrUn (15562442-15562629)
	690-803, gnl\|galGal2\|chr19 (5433769-5433965)
	690-803, gnl\|hg17\|chr17 (24088441-24088637)
	690-803, gnl\|Hg17\|chr17 (24088450-24088563)
	690-803, gnl\|mm7\|chr11 (78252885-78252689)
	690-803, gnl\|Mm7\|chr11 (78252874-78252761)
	690-803, gnl\|monDom2\|scaffold_44 (14687392-14687588)
	690-803, gnl\|oryCun1\|scaffold_211086 (39546-39352)
	690-803, gnl\|panTro1\|chr19_random (12909766-12909600)
	690-803, gnl\|rheMac2\|chr16 (23940424-23940620)
	690-803, gnl\|rn3\|chr10 (64478044-64478238)
	690-803, gnl\|tetNig1\|chr16 (3972670-3972478)
	690-803, gnl\|xenTro1\|scaffold_50 (1137792-1137596)