Non-Coding RNA Search

Ss1.1-Mixn-0007g22.5

Sequence:


               
               TTCACCTGCGTGAGTTGGCAGGTGGGAGAAACACGCTGGATCACTGGGTAGGACTACTCA
GTCCGGCCGTGAACTGCTTGCTTAGAGAAGCATCACTCTCCCCATTGAGAAGATGTGTGG
CGAGACGATGTAGCTACACCATATTGAATGGATGGGTGGATTCAGTGCCCCCGCCCCCCA
GTCAGTTCTGTGGGGGAAAAATATTGAGCCAGTTGTCTCTGCTCTGTTACACAACTGGCG
GACTGAATTCTCGTCGTCGTTCTTGTTGATGTTGTTGTTGTTGTTGTTGTTGCTGTTGTT
CTTTCTCATTGCCACTCGCACAGCCTTACTCTCAAAATGAAACTCTGATTCATTTTCTCT
TCGGTGTTAGCAAACTCCAGCAACAGAAATGGCATCTGTGTTTTGATCCTCAGCATTTAC
CCTGGCAGGAGGCTAATCGGATAGGCTGGTCTTAGACATGAATCCTACCATCGGATATTT
TCGGGGAAAGAAAGAGTACGACTTCCCTTTCCATTCTCCTCCTCACAGATCTCGAAGCCC
TCTTTCCCAAGAGCATCATGTTTCCCTCTGTCATCCATGGACTTAACGAAAATTGCATTG
TGTGGAGGGCAGAGGGCGGGTGGG------------------------CCAGGCCCGTTT
TGGCTTCTGACCTGAGATGGTAATGACTCCTTCCTCAGGCTTACATCCGATCCATGACCC
NTCATCGTTCTTCTAAGAGATTGGAGCTTTGCTGTTTCATTAACTGTGCNGTGTAGACTA
ATGGNGTTTAATAAAAGTNATTGAAAATTTCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCACCTGCGTGAGTTGGCAGGTGGGAGAAACACGCTGGATCACTGGGTAGGACTACTCA
GTCCGGCCGTGAACTGCTTGCTTAGAGAAGCATCACTCTCCCCATTGAGAAGATGTGTGG
CGAGACGATGTAGCTACACCATATTGAATGGATGGGTGGATTCAGTGCCCCCGCCCCCCA
GTCAGTTCTGTGGGGGAAAAATATTGAGCCAGTTGTCTCTGCTCTGTTACACAACTGGCG
GACTGAATTCTCGTCGTCGTTCTTGTTGATGTTGTTGTTGTTGTTGTTGTTGCTGTTGTT
CTTTCTCATTGCCACTCGCACAGCCTTACTCTCAAAATGAAACTCTGATTCATTTTCTCT
TCGGTGTTAGCAAACTCCAGCAACAGAAATGGCATCTGTGTTTTGATCCTCAGCATTTAC
CCTGGCAGGAGGCTAATCGGATAGGCTGGTCTTAGACATGAATCCTACCATCGGATATTT
TCGGGGAAAGAAAGAGTACGACTTCCCTTTCCATTCTCCTCCTCACAGATCTCGAAGCCC
TCTTTCCCAAGAGCATCATGTTTCCCTCTGTCATCCATGGACTTAACGAAAATTGCATTG
TGTGGAGGGCAGAGGGCGGGTGGG------------------------CCAGGCCCGTTT
TGGCTTCTGACCTGAGATGGTAATGACTCCTTCCTCAGGCTTACATCCGATCCATGACCC
NTCATCGTTCTTCTAAGAGATTGGAGCTTTGCTGTTTCATTAACTGTGCNGTGTAGACTA
ATGGNGTTTAATAAAAGTNATTGAAAATTTCAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-197, + strand, RNAz p=0.982542
               

               
               54-146, - strand, RNAz p=0.718718

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-197, + strand, RNAz p=0.982542
               

               
               54-146, - strand, RNAz p=0.718718

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_002025, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002025, +

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               1-623, gnl|bosTau2|chrX (8885032-8885645)
               

               
               1-623, gnl|canFam2|chrX (120238565-120239175)
               

               
               1-623, gnl|dasNov1|scaffold_7686 (4172-4791)
               

               
               1-623, gnl|echTel1|scaffold_315009 (196367-196958)
               

               
               1-623, gnl|hg17|chrX (147781845-147782449)
               

               
               1-623, gnl|Hg17|chrX (147781975-147782572)
               

               
               1-623, gnl|loxAfr1|scaffold_95207 (4939-4343)
               

               
               1-623, gnl|mm7|chrX (65265721-65266290)
               

               
               1-623, gnl|Mm7|chrX (65265850-65266413)
               

               
               1-623, gnl|monDom2|scaffold_84 (1973506-1974126)
               

               
               1-623, gnl|oryCun1|scaffold_201446 (215076-215683)
               

               
               1-623, gnl|rheMac2|chrX (147108807-147109409)
               

               
               1-623, gnl|rn3|chrX (156047325-156047892)
               


               
               682-790, gnl|bosTau2|chrX (8885772-8885877)
               

               
               682-790, gnl|Hg17|chrX (147782709-147782817)
               

               
               682-790, gnl|Mm7|chrX (65266541-65266644)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-623, gnl|bosTau2|chrX (8885032-8885645)
               

               
               1-623, gnl|canFam2|chrX (120238565-120239175)
               

               
               1-623, gnl|dasNov1|scaffold_7686 (4172-4791)
               

               
               1-623, gnl|echTel1|scaffold_315009 (196367-196958)
               

               
               1-623, gnl|hg17|chrX (147781845-147782449)
               

               
               1-623, gnl|Hg17|chrX (147781975-147782572)
               

               
               1-623, gnl|loxAfr1|scaffold_95207 (4939-4343)
               

               
               1-623, gnl|mm7|chrX (65265721-65266290)
               

               
               1-623, gnl|Mm7|chrX (65265850-65266413)
               

               
               1-623, gnl|monDom2|scaffold_84 (1973506-1974126)
               

               
               1-623, gnl|oryCun1|scaffold_201446 (215076-215683)
               

               
               1-623, gnl|rheMac2|chrX (147108807-147109409)
               

               
               1-623, gnl|rn3|chrX (156047325-156047892)
               


               
               682-790, gnl|bosTau2|chrX (8885772-8885877)
               

               
               682-790, gnl|Hg17|chrX (147782709-147782817)
               

               
               682-790, gnl|Mm7|chrX (65266541-65266644)

	1-197, + strand, RNAz p=0.982542
	54-146, - strand, RNAz p=0.718718

	1-623, gnl\|bosTau2\|chrX (8885032-8885645)
	1-623, gnl\|canFam2\|chrX (120238565-120239175)
	1-623, gnl\|dasNov1\|scaffold_7686 (4172-4791)
	1-623, gnl\|echTel1\|scaffold_315009 (196367-196958)
	1-623, gnl\|hg17\|chrX (147781845-147782449)
	1-623, gnl\|Hg17\|chrX (147781975-147782572)
	1-623, gnl\|loxAfr1\|scaffold_95207 (4939-4343)
	1-623, gnl\|mm7\|chrX (65265721-65266290)
	1-623, gnl\|Mm7\|chrX (65265850-65266413)
	1-623, gnl\|monDom2\|scaffold_84 (1973506-1974126)
	1-623, gnl\|oryCun1\|scaffold_201446 (215076-215683)
	1-623, gnl\|rheMac2\|chrX (147108807-147109409)
	1-623, gnl\|rn3\|chrX (156047325-156047892)

	682-790, gnl\|bosTau2\|chrX (8885772-8885877)
	682-790, gnl\|Hg17\|chrX (147782709-147782817)
	682-790, gnl\|Mm7\|chrX (65266541-65266644)