Ss1.1-Mixn-0008j09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTTATTATCATCTTGGAGGAGTGAAACACAGGAGGGAGGTGCGGGGAGGAGGATTTTA AGCCTCCCTCTCATCTGTCTGTGTCTGTCTGTCTGTCTGATTGGTTAGATACAGCCGCCC TCCCAAGCAAATGGTGTTGAGTGGAGAGCAGAGCAACCTTCCCACGGAAGGGACCACTTG AGGTGCTGGTACATTTCCCTCGTTTTCTATGTTCTTTCTAGTAGGTCTCCTGTAGAGATA GAGATATTTTTGTTTTAGAGATTCCAAAGTATATATTTTTAGTGTAAGAAATGTACCCTC TCCACACTCCATGGTGTAAATAGAACAAGAGCCAATGCGTCGTAGTGCTAATCCCGTAGC GAGCTGCGGTAGGAACAGGCCCCCCCCACCCCCGCCCCACCCCCGACCACCAAGTCTCAT GGTCTGTGTGAACCAGCGGAGGTGATGGTGACACCTCTGCCTGCCCAGACCTTCCTGTGC TCAATGGGTGACAAATAAAATCTGTGTAACTGTTCAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTTATTATCATCTTGGAGGAGTGAAACACAGGAGGGAGGTGCGGGGAGGAGGATTTTA AGCCTCCCTCTCATCTGTCTGTGTCTGTCTGTCTGTCTGATTGGTTAGATACAGCCGCCC TCCCAAGCAAATGGTGTTGAGTGGAGAGCAGAGCAACCTTCCCACGGAAGGGACCACTTG AGGTGCTGGTACATTTCCCTCGTTTTCTATGTTCTTTCTAGTAGGTCTCCTGTAGAGATA GAGATATTTTTGTTTTAGAGATTCCAAAGTATATATTTTTAGTGTAAGAAATGTACCCTC TCCACACTCCATGGTGTAAATAGAACAAGAGCCAATGCGTCGTAGTGCTAATCCCGTAGC GAGCTGCGGTAGGAACAGGCCCCCCCCACCCCCGCCCCACCCCCGACCACCAAGTCTCAT GGTCTGTGTGAACCAGCGGAGGTGATGGTGACACCTCTGCCTGCCCAGACCTTCCTGTGC TCAATGGGTGACAAATAAAATCTGTGTAACTGTTCAAAAAAAAAAAAA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 139-249, - strand, RNAz p=0.526298 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 139-249, - strand, RNAz p=0.526298 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 54-514, gnl|bosTau2|chr5 (21030260-21030709) | |
| 54-514, gnl|canFam2|chr27 (6401162-6400280) | |
| 54-514, gnl|canFam2|chr27 (6400760-6401162) | |
| 54-514, gnl|dasNov1|scaffold_7653 (42037-41083) | |
| 54-514, gnl|dasNov1|scaffold_7653 (41626-42037) | |
| 54-514, gnl|echTel1|scaffold_236117 (1114-165) | |
| 54-514, gnl|echTel1|scaffold_236117 (618-1114) | |
| 54-514, gnl|hg17|chr12 (50195189-50196124) | |
| 54-514, gnl|Hg17|chr12 (50195339-50195814) | |
| 54-514, gnl|hg17|chrX (113990559-113991009) | |
| 54-514, gnl|loxAfr1|scaffold_141426 (321-1307) | |
| 54-514, gnl|loxAfr1|scaffold_141426 (780-321) | |
| 54-514, gnl|mm7|chr15 (100808696-100809495) | |
| 54-514, gnl|mm7|chr15 (100809079-100808696) | |
| 54-514, gnl|Mm7|chr15 (100808804-100809215) | |
| 54-514, gnl|oryCun1|scaffold_209113 (39251-38535) | |
| 54-514, gnl|oryCun1|scaffold_209113 (38892-39233) | |
| 54-514, gnl|panTro1|chr10_random (21047464-21048399) | |
| 54-514, gnl|panTro1|chrX (117873384-117873833) | |
| 54-514, gnl|rheMac2|chr11 (48665125-48666055) | |
| 54-514, gnl|rheMac2|chr11 (48665571-48665125) | |
| 54-514, gnl|rn3|chr11 (40855406-40855015) | |
| 54-514, gnl|rn3|chr7 (139659762-139660593) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 54-514, gnl|bosTau2|chr5 (21030260-21030709) | |
| 54-514, gnl|canFam2|chr27 (6401162-6400280) | |
| 54-514, gnl|canFam2|chr27 (6400760-6401162) | |
| 54-514, gnl|dasNov1|scaffold_7653 (42037-41083) | |
| 54-514, gnl|dasNov1|scaffold_7653 (41626-42037) | |
| 54-514, gnl|echTel1|scaffold_236117 (1114-165) | |
| 54-514, gnl|echTel1|scaffold_236117 (618-1114) | |
| 54-514, gnl|hg17|chr12 (50195189-50196124) | |
| 54-514, gnl|Hg17|chr12 (50195339-50195814) | |
| 54-514, gnl|hg17|chrX (113990559-113991009) | |
| 54-514, gnl|loxAfr1|scaffold_141426 (321-1307) | |
| 54-514, gnl|loxAfr1|scaffold_141426 (780-321) | |
| 54-514, gnl|mm7|chr15 (100808696-100809495) | |
| 54-514, gnl|mm7|chr15 (100809079-100808696) | |
| 54-514, gnl|Mm7|chr15 (100808804-100809215) | |
| 54-514, gnl|oryCun1|scaffold_209113 (39251-38535) | |
| 54-514, gnl|oryCun1|scaffold_209113 (38892-39233) | |
| 54-514, gnl|panTro1|chr10_random (21047464-21048399) | |
| 54-514, gnl|panTro1|chrX (117873384-117873833) | |
| 54-514, gnl|rheMac2|chr11 (48665125-48666055) | |
| 54-514, gnl|rheMac2|chr11 (48665571-48665125) | |
| 54-514, gnl|rn3|chr11 (40855406-40855015) | |
| 54-514, gnl|rn3|chr7 (139659762-139660593) |