Non-Coding RNA Search

Ss1.1-Mixn-0008l21.5

Sequence:


               
               TGGCCAGGGGCCCGGAGCTGATGGCCATCGAGGGGCTGGAGAATGGGGAAGGTCCGGCTG
CGGCTGGCCCACGCCTCCTCACCTTTCAGGGCAGTGAGCTGAGCCCGGAGCTCCAGGCAG
CCATGGCAGGGGGCGGCCCCGAGCCCCTCCCTCTGCCCCCTGCCCGCTCCCCCAGCCAGG
AGAGCATTGGGGCGCGTTCACGAGGGTCCGGTCACTCGCAGGAGCAGCCTGCCCCCCAGC
CCGGTGGCGCAGACCCCAACGCCCCACAGGAGAGGAATCTTCCTGAGGGCACAGAGCGGC
CCCCTAAGCTCTGTTCCCCACTTCCTGGCCAAGGGGCCCCCCCTTATGTCTTCATGTACC
CCCAGGGCTCACCCTCCAGCCCAGCCCCAGGGCCACCTCCTGGCGCACCCCGGGCCTTCT
CCTACCTGGCTGGCCCCCCCGCCACTCCGCCGGACCCGCCCCGGCCCAAGCGCCGCTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCCAGGGGCCCGGAGCTGATGGCCATCGAGGGGCTGGAGAATGGGGAAGGTCCGGCTG
CGGCTGGCCCACGCCTCCTCACCTTTCAGGGCAGTGAGCTGAGCCCGGAGCTCCAGGCAG
CCATGGCAGGGGGCGGCCCCGAGCCCCTCCCTCTGCCCCCTGCCCGCTCCCCCAGCCAGG
AGAGCATTGGGGCGCGTTCACGAGGGTCCGGTCACTCGCAGGAGCAGCCTGCCCCCCAGC
CCGGTGGCGCAGACCCCAACGCCCCACAGGAGAGGAATCTTCCTGAGGGCACAGAGCGGC
CCCCTAAGCTCTGTTCCCCACTTCCTGGCCAAGGGGCCCCCCCTTATGTCTTCATGTACC
CCCAGGGCTCACCCTCCAGCCCAGCCCCAGGGCCACCTCCTGGCGCACCCCGGGCCTTCT
CCTACCTGGCTGGCCCCCCCGCCACTCCGCCGGACCCGCCCCGGCCCAAGCGCCGCTCCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               80-199, - strand, RNAz p=0.755838
               

               
               280-439, - strand, RNAz p=0.993802

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.755838
               

               
               280-439, - strand, RNAz p=0.993802

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               81-159, - strand, RNAmicro p=0.970135
               

               
               174-443, - strand, RNAmicro p=0.955398

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               81-159, - strand, RNAmicro p=0.970135
               

               
               174-443, - strand, RNAmicro p=0.955398

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               354-439, DA151993 BRAMY2 Homo sapiens cDNA clone BRAMY2010155 5', mRNA 
(dbj|DA151993.1|), blast E-value=2e-25, identity=93.02% 
               

               
               285-439, DA435594 CTONG2 Homo sapiens cDNA clone CTONG2002365 5', mRNA 
(dbj|DA435594.1|), blast E-value=6e-35, identity=86.45% 
               

               
               285-439, DA952264 SPLEN2 Homo sapiens cDNA clone SPLEN2029860 5', mRNA 
(dbj|DA952264.1|), blast E-value=6e-35, identity=86.45% 
               

               
               345-439, 601193075F1 NIH_MGC_7 Homo sapiens cDNA clone IMAGE (gb|BE265978.1|), 
blast E-value=3e-21, identity=90.53% 
               

               
               371-434, 603353667F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE (gb|BI731914.1|), 
blast E-value=0.00000000000001, identity=92.19% 
               

               
               345-439, AGENCOURT_6545336 NIH_MGC_88 Homo sapiens cDNA clone IMAGE 
(gb|BM551249.1|), blast E-value=5e-26, identity=91.58%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               354-439, DA151993 BRAMY2 Homo sapiens cDNA clone BRAMY2010155 5', mRNA 
(dbj|DA151993.1|), blast E-value=2e-25, identity=93.02% 
               

               
               285-439, DA435594 CTONG2 Homo sapiens cDNA clone CTONG2002365 5', mRNA 
(dbj|DA435594.1|), blast E-value=6e-35, identity=86.45% 
               

               
               285-439, DA952264 SPLEN2 Homo sapiens cDNA clone SPLEN2029860 5', mRNA 
(dbj|DA952264.1|), blast E-value=6e-35, identity=86.45% 
               

               
               345-439, 601193075F1 NIH_MGC_7 Homo sapiens cDNA clone IMAGE (gb|BE265978.1|), 
blast E-value=3e-21, identity=90.53% 
               

               
               371-434, 603353667F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE (gb|BI731914.1|), 
blast E-value=0.00000000000001, identity=92.19% 
               

               
               345-439, AGENCOURT_6545336 NIH_MGC_88 Homo sapiens cDNA clone IMAGE 
(gb|BM551249.1|), blast E-value=5e-26, identity=91.58%

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-480, gnl|bosTau2|chr19 (51577304-51577783)
               

               
               1-480, gnl|Hg17|chr17 (71010834-71010355)
               

               
               1-480, gnl|Mm7|chr11 (115911090-115910611)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-480, gnl|bosTau2|chr19 (51577304-51577783)
               

               
               1-480, gnl|Hg17|chr17 (71010834-71010355)
               

               
               1-480, gnl|Mm7|chr11 (115911090-115910611)

	80-199, - strand, RNAz p=0.755838
	280-439, - strand, RNAz p=0.993802

	81-159, - strand, RNAmicro p=0.970135
	174-443, - strand, RNAmicro p=0.955398

	354-439, DA151993 BRAMY2 Homo sapiens cDNA clone BRAMY2010155 5', mRNA (dbj\|DA151993.1\|), blast E-value=2e-25, identity=93.02%
	285-439, DA435594 CTONG2 Homo sapiens cDNA clone CTONG2002365 5', mRNA (dbj\|DA435594.1\|), blast E-value=6e-35, identity=86.45%
	285-439, DA952264 SPLEN2 Homo sapiens cDNA clone SPLEN2029860 5', mRNA (dbj\|DA952264.1\|), blast E-value=6e-35, identity=86.45%
	345-439, 601193075F1 NIH_MGC_7 Homo sapiens cDNA clone IMAGE (gb\|BE265978.1\|), blast E-value=3e-21, identity=90.53%
	371-434, 603353667F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE (gb\|BI731914.1\|), blast E-value=0.00000000000001, identity=92.19%
	345-439, AGENCOURT_6545336 NIH_MGC_88 Homo sapiens cDNA clone IMAGE (gb\|BM551249.1\|), blast E-value=5e-26, identity=91.58%

	1-480, gnl\|bosTau2\|chr19 (51577304-51577783)
	1-480, gnl\|Hg17\|chr17 (71010834-71010355)
	1-480, gnl\|Mm7\|chr11 (115911090-115910611)