Ss1.1-Mixn-0008p15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGAGGCACTAGGAAGCTATGGGAAATTCCTCCTTATGAAACCAAGGGAGTGATGAGAGC TAGTTTTTCATCTCGAGAAGCAGATAATCACACAGCCTTCATAAGGATAAAGACCAATGC TTCAGACAGCACAGAGTTTATCATTCTTCCTGTTGAGGTGGAAGTTACAACAGCTCCCGG AATTTATTCCTCAACTGAAATGTTAGATTTTGGTACACTGCGAACACAAGATCTACCAAA AGTTTTAAATCTTCATTTATTAAACTCGGGAACAAAAGATGTACCAATAACAAGTGTTCG ACCTACACCACAAAATGATGCTATAACAGTACACTTTAAACCAATTACATTAAAAGCTTC AGAAAGTAAATATACCAAGGTTGCAAGTATTAGTTTTGATGCATCAAAGGCAAAAAAACC ATCTCAGTTTTCTGGGAAAATAACTGTTAAAGCAAAGGAGAAGAGTTATTCTAAACTTGA AATACCGTATCAGGCAGAGGTTTTAGATGGTTATTTGGGATTTGATCACGCTGCAACATT ATTTCACATTCGAGACAGTCCTGCTGATCCTGTGGAAAGGCCAATTTACCTTACTAACAC TTTCAGTTTTGCGATCCTCATTCATGATGTGTTGCTACCAGAAGAAGCCAAAACAATGTT TAAAGTTCACAACTTCAGCAAACCAGTCTTAATTCTTCCAAATGAATCAGGATACATTTT TACTCTGCTTTTTATGCCATCCGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGAGGCACTAGGAAGCTATGGGAAATTCCTCCTTATGAAACCAAGGGAGTGATGAGAGC TAGTTTTTCATCTCGAGAAGCAGATAATCACACAGCCTTCATAAGGATAAAGACCAATGC TTCAGACAGCACAGAGTTTATCATTCTTCCTGTTGAGGTGGAAGTTACAACAGCTCCCGG AATTTATTCCTCAACTGAAATGTTAGATTTTGGTACACTGCGAACACAAGATCTACCAAA AGTTTTAAATCTTCATTTATTAAACTCGGGAACAAAAGATGTACCAATAACAAGTGTTCG ACCTACACCACAAAATGATGCTATAACAGTACACTTTAAACCAATTACATTAAAAGCTTC AGAAAGTAAATATACCAAGGTTGCAAGTATTAGTTTTGATGCATCAAAGGCAAAAAAACC ATCTCAGTTTTCTGGGAAAATAACTGTTAAAGCAAAGGAGAAGAGTTATTCTAAACTTGA AATACCGTATCAGGCAGAGGTTTTAGATGGTTATTTGGGATTTGATCACGCTGCAACATT ATTTCACATTCGAGACAGTCCTGCTGATCCTGTGGAAAGGCCAATTTACCTTACTAACAC TTTCAGTTTTGCGATCCTCATTCATGATGTGTTGCTACCAGAAGAAGCCAAAACAATGTT TAAAGTTCACAACTTCAGCAAACCAGTCTTAATTCTTCCAAATGAATCAGGATACATTTT TACTCTGCTTTTTATGCCATCCGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 22-140, - strand, RNAz p=0.548419 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 22-140, - strand, RNAz p=0.548419 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 22-173, gnl|bosTau2|chr11 (3100645-3100796) | |
| 22-173, gnl|canFam2|chr10 (47883276-47883117) | |
| 22-173, gnl|echTel1|scaffold_262115 (7304-7145) | |
| 22-173, gnl|fr1|chrUn (238542371-238542526) | |
| 22-173, gnl|galGal2|chr1 (125165151-125164992) | |
| 22-173, gnl|hg17|chr2 (97909751-97909910) | |
| 22-173, gnl|Hg17|chr2 (97909907-97909756) | |
| 22-173, gnl|loxAfr1|scaffold_7100 (39429-39588) | |
| 22-173, gnl|mm7|chr1 (37076138-37076297) | |
| 22-173, gnl|Mm7|chr1 (37076294-37076143) | |
| 22-173, gnl|monDom2|scaffold_11 (14025317-14025158) | |
| 22-173, gnl|oryCun1|scaffold_207799 (63184-63025) | |
| 22-173, gnl|panTro1|chr12 (100608646-100608805) | |
| 22-173, gnl|rheMac2|chr13 (97665272-97665431) | |
| 22-173, gnl|rn3|chr9 (35763187-35763346) | |
| 22-173, gnl|tetNig1|chr1_random (1028240-1028410) | |
| 22-173, gnl|xenTro1|scaffold_4 (5907323-5907164) | |
| 293-401, gnl|bosTau2|chr11 (3111293-3111401) | |
| 293-401, gnl|canFam2|chr10 (47893374-47893227) | |
| 293-401, gnl|dasNov1|scaffold_12792 (35002-34861) | |
| 293-401, gnl|fr1|chrUn (238541186-238541326) | |
| 293-401, gnl|galGal2|chr1 (125171071-125170918) | |
| 293-401, gnl|hg17|chr2 (97893573-97893725) | |
| 293-401, gnl|Hg17|chr2 (97893702-97893594) | |
| 293-401, gnl|loxAfr1|scaffold_7100 (24139-24281) | |
| 293-401, gnl|mm7|chr1 (37070926-37071075) | |
| 293-401, gnl|Mm7|chr1 (37071055-37070947) | |
| 293-401, gnl|monDom2|scaffold_11 (14031702-14031552) | |
| 293-401, gnl|oryCun1|scaffold_207799 (70067-69912) | |
| 293-401, gnl|panTro1|chr12 (100592433-100592585) | |
| 293-401, gnl|rheMac2|chr13 (97649820-97649972) | |
| 293-401, gnl|rn3|chr9 (35758565-35758714) | |
| 293-401, gnl|tetNig1|chr1_random (1027734-1027861) | |
| 293-401, gnl|xenTro1|scaffold_4 (5909764-5909611) | |
| 501-666, gnl|bosTau2|chr11 (3115532-3115697) | |
| 501-666, gnl|Hg17|chr2 (97889378-97889214) | |
| 501-666, gnl|Mm7|chr1 (37068806-37068641) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 22-173, gnl|bosTau2|chr11 (3100645-3100796) | |
| 22-173, gnl|canFam2|chr10 (47883276-47883117) | |
| 22-173, gnl|echTel1|scaffold_262115 (7304-7145) | |
| 22-173, gnl|fr1|chrUn (238542371-238542526) | |
| 22-173, gnl|galGal2|chr1 (125165151-125164992) | |
| 22-173, gnl|hg17|chr2 (97909751-97909910) | |
| 22-173, gnl|Hg17|chr2 (97909907-97909756) | |
| 22-173, gnl|loxAfr1|scaffold_7100 (39429-39588) | |
| 22-173, gnl|mm7|chr1 (37076138-37076297) | |
| 22-173, gnl|Mm7|chr1 (37076294-37076143) | |
| 22-173, gnl|monDom2|scaffold_11 (14025317-14025158) | |
| 22-173, gnl|oryCun1|scaffold_207799 (63184-63025) | |
| 22-173, gnl|panTro1|chr12 (100608646-100608805) | |
| 22-173, gnl|rheMac2|chr13 (97665272-97665431) | |
| 22-173, gnl|rn3|chr9 (35763187-35763346) | |
| 22-173, gnl|tetNig1|chr1_random (1028240-1028410) | |
| 22-173, gnl|xenTro1|scaffold_4 (5907323-5907164) | |
| 293-401, gnl|bosTau2|chr11 (3111293-3111401) | |
| 293-401, gnl|canFam2|chr10 (47893374-47893227) | |
| 293-401, gnl|dasNov1|scaffold_12792 (35002-34861) | |
| 293-401, gnl|fr1|chrUn (238541186-238541326) | |
| 293-401, gnl|galGal2|chr1 (125171071-125170918) | |
| 293-401, gnl|hg17|chr2 (97893573-97893725) | |
| 293-401, gnl|Hg17|chr2 (97893702-97893594) | |
| 293-401, gnl|loxAfr1|scaffold_7100 (24139-24281) | |
| 293-401, gnl|mm7|chr1 (37070926-37071075) | |
| 293-401, gnl|Mm7|chr1 (37071055-37070947) | |
| 293-401, gnl|monDom2|scaffold_11 (14031702-14031552) | |
| 293-401, gnl|oryCun1|scaffold_207799 (70067-69912) | |
| 293-401, gnl|panTro1|chr12 (100592433-100592585) | |
| 293-401, gnl|rheMac2|chr13 (97649820-97649972) | |
| 293-401, gnl|rn3|chr9 (35758565-35758714) | |
| 293-401, gnl|tetNig1|chr1_random (1027734-1027861) | |
| 293-401, gnl|xenTro1|scaffold_4 (5909764-5909611) | |
| 501-666, gnl|bosTau2|chr11 (3115532-3115697) | |
| 501-666, gnl|Hg17|chr2 (97889378-97889214) | |
| 501-666, gnl|Mm7|chr1 (37068806-37068641) |