Non-Coding RNA Search

Ss1.1-Mixn-0009j19.5

Sequence:


               
               TCAGCTCTGCAGGTGTGGAGAATTAGAGCCTTAGCTCTGCCTCAGAGAGGGACCTCAGTT
TTCCCGCAAGTCAAATGGGATCCCCACCCTAAGACTGTCTCAATTCTCTTCATCACCTAC
CCTTGCCTTGTCCTTTCCGAACGGCCCCAGGCCTCCACTCCTCTCAGTCTCTAGAGCTCT
TCCCTGGGCCTAATTCCCAGGGGCGGACAGGGGCAGGGAGAGTAGGACAGCGCCCAACCC
TAAGGGAGCTCCCAGAACTGGTCTGAAAGAAACTCCTAGAGATAGGGCGAAAATGGCCAG
CTTCCGGCATCAGACAGACTTGTGTTCGAATTCGACTCTGCTTCTGACCAACTGACTTTG
AGCGCTTCATCTCTCTGTGCCTCAGTTGTTCCTACTGTGAAACGGGGACCCAGCCTGATG
ACGAAGGATGAAAAGAACCCAGCGGAGGATCTGACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGCTCTGCAGGTGTGGAGAATTAGAGCCTTAGCTCTGCCTCAGAGAGGGACCTCAGTT
TTCCCGCAAGTCAAATGGGATCCCCACCCTAAGACTGTCTCAATTCTCTTCATCACCTAC
CCTTGCCTTGTCCTTTCCGAACGGCCCCAGGCCTCCACTCCTCTCAGTCTCTAGAGCTCT
TCCCTGGGCCTAATTCCCAGGGGCGGACAGGGGCAGGGAGAGTAGGACAGCGCCCAACCC
TAAGGGAGCTCCCAGAACTGGTCTGAAAGAAACTCCTAGAGATAGGGCGAAAATGGCCAG
CTTCCGGCATCAGACAGACTTGTGTTCGAATTCGACTCTGCTTCTGACCAACTGACTTTG
AGCGCTTCATCTCTCTGTGCCTCAGTTGTTCCTACTGTGAAACGGGGACCCAGCCTGATG
ACGAAGGATGAAAAGAACCCAGCGGAGGATCTGACC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               9-122, - strand, RNAz p=0.999922
               

               
               162-274, + strand, RNAz p=0.841076

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               9-122, - strand, RNAz p=0.999922
               

               
               162-274, + strand, RNAz p=0.841076

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               9-455, gnl|bosTau2|chr22 (11917621-11917163)
               

               
               9-455, gnl|Hg17|chr3 (9787226-9786786)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-455, gnl|bosTau2|chr22 (11917621-11917163)
               

               
               9-455, gnl|Hg17|chr3 (9787226-9786786)

	9-122, - strand, RNAz p=0.999922
	162-274, + strand, RNAz p=0.841076

	9-455, gnl\|bosTau2\|chr22 (11917621-11917163)
	9-455, gnl\|Hg17\|chr3 (9787226-9786786)