Ss1.1-Mixn-0010c08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATACTTTGATTATTGAAGATTTGAAAAATGAACTCCAAAGAAACAAAGGAGCTTCAGCA CTTTCTCAACAGACTCATTATATGAAAATTCAGTCTAAGGTTCAAATTTTAGAAGAGAGA ACTAAAGAGGCTGAGAGAACAGCTGAGCTGGCTGAGGCTGATGCTAGAGAAAAGGATAAA GAGTTAGTTGAGACTCTGAAGCGATTAAAAGATTATGAATCGGGAATTTATGGTTTAGAA GATGCTGTTATTGAAATAAAGAATTGTAAAAACCAATTAAAATAAGAGATCGAGAGATTG AAGTATTGACAAAAGAAATCAATAAACTTGAGATGAAGATCAATGATTTCCTTGATGAAA ATGAAGCACTTAGAGAACGTGTAGGTCTTGAACCAAAGACAATGATTGATTTAACTGAAT TTAGAAATAGCAAAAGTTTAAAACAGCAGCAGTACAGAGCTGAAAACCAGATTCTCTTGA AAGAGATTGAAAGTCTAGAGGAAGAGCGGCTTGAACTGAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATACTTTGATTATTGAAGATTTGAAAAATGAACTCCAAAGAAACAAAGGAGCTTCAGCA CTTTCTCAACAGACTCATTATATGAAAATTCAGTCTAAGGTTCAAATTTTAGAAGAGAGA ACTAAAGAGGCTGAGAGAACAGCTGAGCTGGCTGAGGCTGATGCTAGAGAAAAGGATAAA GAGTTAGTTGAGACTCTGAAGCGATTAAAAGATTATGAATCGGGAATTTATGGTTTAGAA GATGCTGTTATTGAAATAAAGAATTGTAAAAACCAATTAAAATAAGAGATCGAGAGATTG AAGTATTGACAAAAGAAATCAATAAACTTGAGATGAAGATCAATGATTTCCTTGATGAAA ATGAAGCACTTAGAGAACGTGTAGGTCTTGAACCAAAGACAATGATTGATTTAACTGAAT TTAGAAATAGCAAAAGTTTAAAACAGCAGCAGTACAGAGCTGAAAACCAGATTCTCTTGA AAGAGATTGAAAGTCTAGAGGAAGAGCGGCTTGAACTGAAAAAAAAAA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 48-166, - strand, RNAz p=0.756065 | |
| 261-386, - strand, RNAz p=0.919561 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 48-166, - strand, RNAz p=0.756065 | |
| 261-386, - strand, RNAz p=0.919561 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 48-221, gnl|bosTau2|chr10 (47367393-47367220) | |
| 48-221, gnl|Hg17|chr12 (87017413-87017243) | |
| 48-221, gnl|Mm7|chr10 (99987743-99987916) | |
| 222-386, gnl|bosTau2|chr10 (47366511-47366346) | |
| 222-386, gnl|canFam2|chr15 (32273430-32273619) | |
| 222-386, gnl|danRer3|chr25 (12492916-12492732) | |
| 222-386, gnl|echTel1|scaffold_309593 (4092-3903) | |
| 222-386, gnl|fr1|chrUn (245548640-245548462) | |
| 222-386, gnl|galGal2|chr1 (39634381-39634570) | |
| 222-386, gnl|hg17|chr12 (87016347-87016536) | |
| 222-386, gnl|Hg17|chr12 (87016522-87016357) | |
| 222-386, gnl|loxAfr1|scaffold_203787 (418-606) | |
| 222-386, gnl|mm7|chr10 (99995482-99995293) | |
| 222-386, gnl|Mm7|chr10 (99995305-99995470) | |
| 222-386, gnl|monDom2|scaffold_36 (24448413-24448611) | |
| 222-386, gnl|oryCun1|scaffold_211312 (45733-45922) | |
| 222-386, gnl|panTro1|chr10 (89149253-89149439) | |
| 222-386, gnl|rheMac2|chr11 (89244158-89244347) | |
| 222-386, gnl|rn3|chr7 (38179156-38178967) | |
| 222-386, gnl|tetNig1|chr13 (11883684-11883877) | |
| 222-386, gnl|xenTro1|scaffold_237 (1193532-1193340) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 48-221, gnl|bosTau2|chr10 (47367393-47367220) | |
| 48-221, gnl|Hg17|chr12 (87017413-87017243) | |
| 48-221, gnl|Mm7|chr10 (99987743-99987916) | |
| 222-386, gnl|bosTau2|chr10 (47366511-47366346) | |
| 222-386, gnl|canFam2|chr15 (32273430-32273619) | |
| 222-386, gnl|danRer3|chr25 (12492916-12492732) | |
| 222-386, gnl|echTel1|scaffold_309593 (4092-3903) | |
| 222-386, gnl|fr1|chrUn (245548640-245548462) | |
| 222-386, gnl|galGal2|chr1 (39634381-39634570) | |
| 222-386, gnl|hg17|chr12 (87016347-87016536) | |
| 222-386, gnl|Hg17|chr12 (87016522-87016357) | |
| 222-386, gnl|loxAfr1|scaffold_203787 (418-606) | |
| 222-386, gnl|mm7|chr10 (99995482-99995293) | |
| 222-386, gnl|Mm7|chr10 (99995305-99995470) | |
| 222-386, gnl|monDom2|scaffold_36 (24448413-24448611) | |
| 222-386, gnl|oryCun1|scaffold_211312 (45733-45922) | |
| 222-386, gnl|panTro1|chr10 (89149253-89149439) | |
| 222-386, gnl|rheMac2|chr11 (89244158-89244347) | |
| 222-386, gnl|rn3|chr7 (38179156-38178967) | |
| 222-386, gnl|tetNig1|chr13 (11883684-11883877) | |
| 222-386, gnl|xenTro1|scaffold_237 (1193532-1193340) |