Ss1.1-Mixn-0010h16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGGCGCCGCGGGCAGGGCCGGGCGGACGGGCGCTGGCAGCAGGGGCAGCGCCGCGGGC CCCTCGGAGTGGCCGCAGTCCGGGCCTCGGCCCTCCCATCCTGCCTGGCCGCGGCTGGTG TGCGTGGCAGGAGCCGTCGTGGGCACCATGGCCAAGAGGGAGGACAGCCCCAGCTCAGAG GTCCCGCCGATGGACAAGCAGTTCCTGGTGTGCAGCATCTGCCTGGACCGGTACCGGTGC CCCAAGGTTCTGCCTTGCCTGCACACCTTCTGTGAGAGGTGCCTCCAGAACTACATCCCT GCCCAGAGCCTGACGCTGTCCTGTCCGGTGTGTCGGCAGACGTCCATCCTCCCGGAGCAG GGCGTCTCCGCGCTGCAGAACAACTTCTTCATCAGCAGCCTCATGGAGGCCATGCAGCAG GCGCCCGATGGGGCCCACGACCCCGAGGGCCCCCACCCCCTCAGCGCAGTGGCTGGCCGT CCCCTCTCCTGCCCCAACCATGAAGACGATGGAGTTTTACTGTGAGGCCTGTGAGACGGC CATGTGCGGCGAGTGTCGCGCGGGGGAGCACCGGGAGCACGGCACGGTGCTGCTGCGCGA CGTGGTGGAGCAGCACAAGGCGGCCCTGCAGCGCCAGCTCGAGGCGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGGCGCCGCGGGCAGGGCCGGGCGGACGGGCGCTGGCAGCAGGGGCAGCGCCGCGGGC CCCTCGGAGTGGCCGCAGTCCGGGCCTCGGCCCTCCCATCCTGCCTGGCCGCGGCTGGTG TGCGTGGCAGGAGCCGTCGTGGGCACCATGGCCAAGAGGGAGGACAGCCCCAGCTCAGAG GTCCCGCCGATGGACAAGCAGTTCCTGGTGTGCAGCATCTGCCTGGACCGGTACCGGTGC CCCAAGGTTCTGCCTTGCCTGCACACCTTCTGTGAGAGGTGCCTCCAGAACTACATCCCT GCCCAGAGCCTGACGCTGTCCTGTCCGGTGTGTCGGCAGACGTCCATCCTCCCGGAGCAG GGCGTCTCCGCGCTGCAGAACAACTTCTTCATCAGCAGCCTCATGGAGGCCATGCAGCAG GCGCCCGATGGGGCCCACGACCCCGAGGGCCCCCACCCCCTCAGCGCAGTGGCTGGCCGT CCCCTCTCCTGCCCCAACCATGAAGACGATGGAGTTTTACTGTGAGGCCTGTGAGACGGC CATGTGCGGCGAGTGTCGCGCGGGGGAGCACCGGGAGCACGGCACGGTGCTGCTGCGCGA CGTGGTGGAGCAGCACAAGGCGGCCCTGCAGCGCCAGCTCGAGGCGGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 317-436, - strand, RNAz p=0.939228 | |
| 353-462, + strand, RNAz p=0.940285 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 317-436, - strand, RNAz p=0.939228 | |
| 353-462, + strand, RNAz p=0.940285 |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 1-114, gnl|bosTau2|chr15 (28746204-28746091) | |
| 1-114, gnl|hg17|chr11 (6451434-6451944) | |
| 1-114, gnl|Hg17|chr11 (6451700-6451596) | |
| 1-114, gnl|loxAfr1|scaffold_11211 (3687-4258) | |
| 1-114, gnl|mm7|chr7 (101689635-101690157) | |
| 1-114, gnl|Mm7|chr7 (101689935-101689823) | |
| 1-114, gnl|oryCun1|scaffold_214888 (112256-111715) | |
| 1-114, gnl|panTro1|chr9 (6594080-6594591) | |
| 1-114, gnl|rheMac2|chr14 (65730638-65730142) | |
| 1-114, gnl|rn3|chr1 (163457976-163458444) | |
| 277-505, gnl|bosTau2|chr15 (28730455-28730227) | |
| 277-505, gnl|canFam2|chr21 (32963331-32963606) | |
| 277-505, gnl|danRer3|chr10 (18257365-18257102) | |
| 277-505, gnl|dasNov1|scaffold_6768 (25416-25661) | |
| 277-505, gnl|echTel1|scaffold_194444 (1468-1191) | |
| 277-505, gnl|fr1|chrUn (13559671-13559409) | |
| 277-505, gnl|galGal2|chr4 (20451804-20451528) | |
| 277-505, gnl|hg17|chr11 (6435847-6436119) | |
| 277-505, gnl|Hg17|chr11 (6436104-6435876) | |
| 277-505, gnl|loxAfr1|scaffold_59816 (9200-9475) | |
| 277-505, gnl|mm7|chr7 (101675780-101676056) | |
| 277-505, gnl|Mm7|chr7 (101676037-101675809) | |
| 277-505, gnl|monDom2|scaffold_43 (18654137-18653867) | |
| 277-505, gnl|oryCun1|scaffold_172930 (56563-56839) | |
| 277-505, gnl|panTro1|chr9 (6578504-6578776) | |
| 277-505, gnl|rheMac2|chr14 (65745618-65745343) | |
| 277-505, gnl|rn3|chr1 (163442153-163442429) | |
| 277-505, gnl|tetNig1|chr16 (4946323-4946583) | |
| 277-505, gnl|xenTro1|scaffold_93 (1348899-1349145) | |
| 508-645, gnl|bosTau2|chr17 (3324093-3323956) | |
| 508-645, gnl|canFam2|chr15 (54123253-54123406) | |
| 508-645, gnl|danRer3|chr1 (24225957-24225804) | |
| 508-645, gnl|dasNov1|scaffold_43638 (3820-3973) | |
| 508-645, gnl|echTel1|scaffold_242947 (6574-6727) | |
| 508-645, gnl|fr1|chrUn (13559965-13560118) | |
| 508-645, gnl|galGal2|chr4 (20457279-20457432) | |
| 508-645, gnl|hg17|chr4 (154571737-154571890) | |
| 508-645, gnl|Hg17|chr4 (154571741-154571878) | |
| 508-645, gnl|loxAfr1|scaffold_27991 (34055-33902) | |
| 508-645, gnl|mm7|chr3 (84306581-84306428) | |
| 508-645, gnl|Mm7|chr3 (84306575-84306438) | |
| 508-645, gnl|monDom2|scaffold_9 (23512922-23513075) | |
| 508-645, gnl|oryCun1|scaffold_179354 (5016-4862) | |
| 508-645, gnl|panTro1|chr3 (171899384-171899537) | |
| 508-645, gnl|rheMac2|chr5 (145494433-145494586) | |
| 508-645, gnl|rn3|chr2 (175894041-175893888) | |
| 508-645, gnl|tetNig1|chr18 (8109898-8110050) | |
| 508-645, gnl|xenTro1|scaffold_93 (1341148-1340996) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-114, gnl|bosTau2|chr15 (28746204-28746091) | |
| 1-114, gnl|hg17|chr11 (6451434-6451944) | |
| 1-114, gnl|Hg17|chr11 (6451700-6451596) | |
| 1-114, gnl|loxAfr1|scaffold_11211 (3687-4258) | |
| 1-114, gnl|mm7|chr7 (101689635-101690157) | |
| 1-114, gnl|Mm7|chr7 (101689935-101689823) | |
| 1-114, gnl|oryCun1|scaffold_214888 (112256-111715) | |
| 1-114, gnl|panTro1|chr9 (6594080-6594591) | |
| 1-114, gnl|rheMac2|chr14 (65730638-65730142) | |
| 1-114, gnl|rn3|chr1 (163457976-163458444) | |
| 277-505, gnl|bosTau2|chr15 (28730455-28730227) | |
| 277-505, gnl|canFam2|chr21 (32963331-32963606) | |
| 277-505, gnl|danRer3|chr10 (18257365-18257102) | |
| 277-505, gnl|dasNov1|scaffold_6768 (25416-25661) | |
| 277-505, gnl|echTel1|scaffold_194444 (1468-1191) | |
| 277-505, gnl|fr1|chrUn (13559671-13559409) | |
| 277-505, gnl|galGal2|chr4 (20451804-20451528) | |
| 277-505, gnl|hg17|chr11 (6435847-6436119) | |
| 277-505, gnl|Hg17|chr11 (6436104-6435876) | |
| 277-505, gnl|loxAfr1|scaffold_59816 (9200-9475) | |
| 277-505, gnl|mm7|chr7 (101675780-101676056) | |
| 277-505, gnl|Mm7|chr7 (101676037-101675809) | |
| 277-505, gnl|monDom2|scaffold_43 (18654137-18653867) | |
| 277-505, gnl|oryCun1|scaffold_172930 (56563-56839) | |
| 277-505, gnl|panTro1|chr9 (6578504-6578776) | |
| 277-505, gnl|rheMac2|chr14 (65745618-65745343) | |
| 277-505, gnl|rn3|chr1 (163442153-163442429) | |
| 277-505, gnl|tetNig1|chr16 (4946323-4946583) | |
| 277-505, gnl|xenTro1|scaffold_93 (1348899-1349145) | |
| 508-645, gnl|bosTau2|chr17 (3324093-3323956) | |
| 508-645, gnl|canFam2|chr15 (54123253-54123406) | |
| 508-645, gnl|danRer3|chr1 (24225957-24225804) | |
| 508-645, gnl|dasNov1|scaffold_43638 (3820-3973) | |
| 508-645, gnl|echTel1|scaffold_242947 (6574-6727) | |
| 508-645, gnl|fr1|chrUn (13559965-13560118) | |
| 508-645, gnl|galGal2|chr4 (20457279-20457432) | |
| 508-645, gnl|hg17|chr4 (154571737-154571890) | |
| 508-645, gnl|Hg17|chr4 (154571741-154571878) | |
| 508-645, gnl|loxAfr1|scaffold_27991 (34055-33902) | |
| 508-645, gnl|mm7|chr3 (84306581-84306428) | |
| 508-645, gnl|Mm7|chr3 (84306575-84306438) | |
| 508-645, gnl|monDom2|scaffold_9 (23512922-23513075) | |
| 508-645, gnl|oryCun1|scaffold_179354 (5016-4862) | |
| 508-645, gnl|panTro1|chr3 (171899384-171899537) | |
| 508-645, gnl|rheMac2|chr5 (145494433-145494586) | |
| 508-645, gnl|rn3|chr2 (175894041-175893888) | |
| 508-645, gnl|tetNig1|chr18 (8109898-8110050) | |
| 508-645, gnl|xenTro1|scaffold_93 (1341148-1340996) |